Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07894 ATGACTTCAGCTAAGAACGTGGCAAACGCCGTTGGTGGCAAAACGGCGAGAGCCTGTGACAGTTGCATAACAAAACGAGCACGCTGGTACTGTGCTGCCGACGATGCATTCCTCTGTCAAACTTGTGACTCTTCCGTTCACTCTGCTAATCCACTTGCTCGCAGACATGAAAGGGTCCGCTTGAAAACGGCGTCGTACAAATCCGATGAACTCAAACTCAAAATCAATCGTGGTCCTTCTTGGCACCATGGTTTCACCAAGAAAGCGAGAACTCCTAGACATGGGAAACACTCTCGTCAAACAACAAAGTCTTCTAGCAATAACGAGCCTGGAGCGAGAAATCCATTCCATCTTGTGCCAGAAGTTGGATTGGATGAAGTGAATTCCCATGAAGAGAACGAGGAACAGCTTCTTTATAGGGTTCCTATATTCGATCCCTTTGTAGCTGAGCTATGCAGTCCTCCTTCTTCTGTGACTTCAACTGAAGGAGGAGCTGTGGCTGTGGGTTCCTCTGTTTTTGAAAACAGAGGAAGCGAAGGCAAAGGCAACTCCGTTGCTTTTGCTAATTATAATAACAATCATGAAATGGAAGGCTTGCATGGGCTTCTTCCATCTGATATTGAACTTGCTGAATTTGCAGCTGATGTTGAGAGCTTGTTGGGGAGAGGGTTAGAAAACGAGTGCATAGGGATGGAAGACTTGGGGCTGATTGATACCAAACAGGAAGAGGAGGCAGAGTGGGAGTGTTCTGTGGGAAGTGGGAAGGTGAAGGTGGAGGTGGAAGAGAATCCACAAGTGTCTGATTCTTCCAAAGCCTGCAAGGTTGAGGGAGATCACATGGAGATGGAGATGGAGATGGAGATGGAGATGGAAATGGGAAGAGATTCAACATTTGAGTTGAACTTTGATTATGATTCTCATGAAGAGGTGAAGGAGAAGGTTGGTTTGGATGTGACCAAAGATATGGGGAAGAGTGGGGAACACAAAGAAAATAATGAGGTAAAAAGGAAGATATCGTTGCAGCTAGATTATGATGCAGTAATCATAGCCTGGGCTAGCCAAAAGTCTCCATGGACTACTGGTGACAAGCCAAACTTGGACCCTGATGAGTGCTGGCCTGACTGCATGGGAAGTTGTGGAACGGAGGTTCATCATCCTTATGGTGAATTGATTGGATATGGGTGTCATCCAGTAATGGGAGACGGAGGCAGAGAGGCAAGGGTGTCAAGATACAGAGAAAAGCGCCGGACAAGGTTGTTCTCTAAAAAAATAAGGTACGAGGTAAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTGAAGAGGGCTTCCTTTGCAGCACCGACATTTCCTATGCTAAATAAATAA 1380 0.4601 MTSAKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQTCDSSVHSANPLARRHERVRLKTASYKSDELKLKINRGPSWHHGFTKKARTPRHGKHSRQTTKSSSNNEPGARNPFHLVPEVGLDEVNSHEENEEQLLYRVPIFDPFVAELCSPPSSVTSTEGGAVAVGSSVFENRGSEGKGNSVAFANYNNNHEMEGLHGLLPSDIELAEFAADVESLLGRGLENECIGMEDLGLIDTKQEEEAEWECSVGSGKVKVEVEENPQVSDSSKACKVEGDHMEMEMEMEMEMEMGRDSTFELNFDYDSHEEVKEKVGLDVTKDMGKSGEHKENNEVKRKISLQLDYDAVIIAWASQKSPWTTGDKPNLDPDECWPDCMGSCGTEVHHPYGELIGYGCHPVMGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPMLNK. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07894 459 Pfam CCT motif 404 446 IPR010402 GO:0005515
Seca8g07894 459 ProSiteProfiles CCT domain profile. 404 446 IPR010402 GO:0005515
Seca8g07894 459 SMART bboxneu5 14 61 IPR000315 GO:0008270
Seca8g07894 459 MobiDBLite consensus disorder prediction 81 100 - -
Seca8g07894 459 MobiDBLite consensus disorder prediction 77 117 - -
Seca8g07894 459 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Seca8g07894 459 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Seca8g07894 459 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 448 - -
Seca8g07894 459 CDD Bbox1_BBX-like 18 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07894 Seca-Chr8 176495692 176497591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07894 5 446 C2C2-CO-like Transcription Factor Family AT1G25440 44.956 1.38e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca8g07894 zf-B_box 9.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07894 - - vun:114190512 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07894 8 176495692 176497591 Seca8g07894 8 176495692 176497591 ECH