Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07891 ATGAAACTAAGTTGCAATGGGTGTCGCATACTTCGCAGAGGTTGTAGTGAAAATTGTATCATAAGGCCCTGCCTTGAGTGGATCAATTCCGCCGAGTCTCAAGCCAACGCTACTCTTTTCCTTGCCAAATTTTATGGTCGCACTGGCTTGCTCAACCTCCTTGACGCTGCCCCCCATCACCTTGGCTCAGCTGTGTTCAAGTCACTGTTGTATGAGGCTTGTGGTAGATTGGTGAATCCCACTTATGGTTCATTGGGTTTGTTCTGGACCGGAGAGTGGGCCCAATGTGAAGCTGCAGTTAATGCCGTGCTGACTGGGTCTAAGATCAATGATATAACGTCTTCTGATTGGCAGGCATCAAGGACACTTGGTGGTGATCGTGTTCTCCCTTACTGTGACATTCGCCACGTGCCTAGAGGTGTTGAGGTGGACAATGTGAACGAGGAAACCCGATCTAGGCAAGTTATCAGACCCAAACCACGAGTGGGTTTGGTGGACTCTGCTGCATTGTGGAAAACCGGTTGGGAGAATAACATGGAGGAAACCATGGAGGCTTCTTTAGTGAGCCAGGTTGAGCCGAACCGAGCCGGTGAAAACAGGGTGAACTTGGAACTCACTCTTGGCTTCAGTTGCCAATCAAGCAATGACAAGAACGGGCATTATTGA 666 0.4925 MKLSCNGCRILRRGCSENCIIRPCLEWINSAESQANATLFLAKFYGRTGLLNLLDAAPHHLGSAVFKSLLYEACGRLVNPTYGSLGLFWTGEWAQCEAAVNAVLTGSKINDITSSDWQASRTLGGDRVLPYCDIRHVPRGVEVDNVNEETRSRQVIRPKPRVGLVDSAALWKTGWENNMEETMEASLVSQVEPNRAGENRVNLELTLGFSCQSSNDKNGHY. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07891 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 206 - -
Seca8g07891 221 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Seca8g07891 221 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07891 Seca-Chr8 176482891 176484129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07891 1 137 AS2 family AT1G67100 62.044 1.28e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g07891 LOB 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07891 - - gmx:100779034 311.997