Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07884 ATGTTTGTTGTTGCAGCAGGTTACAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGAAGAGTGTGGGAAGGTCTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGTAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACAGAGACGCTGAACCATGCTCGTCAGCTTGTCTTCCGTAACGATCAAAACCTTGTGGCACAAGCTCCCCCTCACCTAGTATGTGTGATATATATGTGCAGATGTTGTCAACCAATAGCAGCAGGGGGTTATCATTCATCAGGTAACATGGGAGACCCAACAGTGCCTCTGAGATTCCCAAGATACTTCTCTGCTTCATCCTCCACCCACGTCCCACCACCACCAGCTCAACCATATTTATACGCTTCACCTTCAAGGCCAGTGTCATTTCCCTCACATTTTCCACAGCATCAGGTGAATGATTACCATGTGGGTCATGTCATGAGTAGCAGCCAGGCATATAACATGAGCTATGGAGGTGGAGGTGGTGATTCAAGTAGTTACACTTGCGTTGGTGCACCGGTGGGACAAGGGTTGTTGAGGAGCATGGATGCAGGTGGTAAGGACGGGTCACTGCAAAATCAGGAGGAAGGGTTGAATTGGGGACGGAGCTATTCAGGTGCAGGAGGAACAGCACAGCATCGTTTGGATCCTCCTTCAGCGATCAATCGGTTTCAAGATGGTTTTTAA 729 0.4883 MFVVAAGYRKKKSGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDQNLVAQAPPHLVCVIYMCRCCQPIAAGGYHSSGNMGDPTVPLRFPRYFSASSSTHVPPPPAQPYLYASPSRPVSFPSHFPQHQVNDYHVGHVMSSSQAYNMSYGGGGGDSSSYTCVGAPVGQGLLRSMDAGGKDGSLQNQEEGLNWGRSYSGAGGTAQHRLDPPSAINRFQDGF. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07884 242 MobiDBLite consensus disorder prediction 219 242 - -
Seca8g07884 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Seca8g07884 242 FunFam Zinc finger protein STAMENLESS 1 4 74 - -
Seca8g07884 242 Gene3D Classic Zinc Finger 9 78 - -
Seca8g07884 242 PANTHER ZINC FINGER PROTEIN JAGGED 16 207 IPR045320 GO:0003700
Seca8g07884 242 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Seca8g07884 242 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07884 Seca-Chr8 176349270 176350433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07884 9 191 C2H2 Transcription Factor Family AT1G13400 45.550 1.75e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07884 - - aprc:113871902 358.221