Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07871 ATGTCCACAATTACAAAGAGAGAATTGGGTTCCAATGAAGAAAGTGAGCTGAGAAGAGGTCCTTGGACTCTTGAAGAAGACAGCCTACTCATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTTAGATGGCTGAATTACTTGAAGCCTGACATTAAAAGAGGGAACCTTACTCCACAGGAACAACTGTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATTAAGAACTACTGGAGAACAAGGGTACAGAAACAGGCACGCCAACTTAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAACTCTTCCTTTACCTCTCACTCCTCCATGACACACATGAATTTTGGGAATTCTGCAGAATCTTCAACCAGTTCAATGTCAACCAGCTTCAATATTCCTTCTCTGTCTCCATCATCTCCTCCACAAATGGAATTTATAGATGCTGCAAACCACTTGAGCACTATGTCCAGCCCCAGCAATCCTTCCTCGGATTCCTTCCAATTTTCACAGCCACTTGAAATTCAACAACACCAAAATGGTCCTCCCAATGTGTTTGAGAATAATGTTTACAGCTATCCAATCCAGGACACCTGCTATGTTGATACCACTAATAACTATGGTTTGGAAGGTCAAAATCTGGATCCCCTGTCTTCAATGGAAACTTATGACATTTCACAGTTTGATTTTCAAACTGCTGGGAGTGGCTGGATGTTAGACAACATGGGTGATACTTTATGGAACATGGATGCTATATGA 909 0.4191 MSTITKRELGSNEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNSSFTSHSSMTHMNFGNSAESSTSSMSTSFNIPSLSPSSPPQMEFIDAANHLSTMSSPSNPSSDSFQFSQPLEIQQHQNGPPNVFENNVYSYPIQDTCYVDTTNNYGLEGQNLDPLSSMETYDISQFDFQTAGSGWMLDNMGDTLWNMDAI. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07871 302 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Seca8g07871 302 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Seca8g07871 302 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Seca8g07871 302 SMART sant 18 68 IPR001005 -
Seca8g07871 302 SMART sant 71 119 IPR001005 -
Seca8g07871 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Seca8g07871 302 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 34 43 IPR001345 GO:0003824
Seca8g07871 302 Gene3D - 75 117 - -
Seca8g07871 302 Gene3D - 16 72 - -
Seca8g07871 302 FunFam MYB transcription factor 76 139 - -
Seca8g07871 302 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Seca8g07871 302 CDD SANT 76 115 IPR001005 -
Seca8g07871 302 FunFam Myb transcription factor 19 71 - -
Seca8g07871 302 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Seca8g07871 302 MobiDBLite consensus disorder prediction 166 194 - -
Seca8g07871 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Seca8g07871 302 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 13 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca8g07871 302 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07871 Seca-Chr8 176149866 176151152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07871 14 157 MYB Transcription Factor Family AT1G68320 83.333 1.59e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g07871 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07871 K09422 - gmx:100775834 493.426