Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07858 ATGGCGGCAGCACCCTCTCACCTCATTGCTTCTTTTATGGTTTTCCATTTTCTTCTCCTGGTTCAAGGTTCCATCAACCCAGATTTCGAAGCTCTTTTGGCCTTCAAAACCGCTTCAGACACATACAAAAAGCTCACAACTTGGAACACCAACACGGACCCATGCACCTGGGACGGTGTCTCGTGCATCAGAAACCGAGTCTCGCGACTCGTTCTGGAAAACCTCGACCTCCAAGGCTCCATCGAGCCCTTAACTTCTCTGACTCAGCTCCGAGTCCTCAGCCTCAAGGGGAACCGTTTTTCCGGTCCCCTTCCGAGTCTCTCCAACTTCACCGCTCTCAAGCTTCTCTTCTTGTCCGATAACGACTTTTCCGGCGAGTTCCCGCTGAGTGTAACTTCGCTTTTCCGCTTGTACCGTCTTGATCTGTCTCACAACAACTTCTCCGGCGAGATTCCGGCGATGGTCAACCGTTTGACCCACCTTCTCACTCTCCGTCTAGATGAGAACCAGTTCTCCGGCAACATTCCCGACGTGAACCTTCCCAGCCTGCAAGACTTCAACGTCTCCGGGAACAGCCTCTCCGGCGAGATACCGAAATCATTATCGGGTTTCCCCGAATCCTCTTTCGGGCAAAACCCATCTCTCTGCGGAGCCCCGATGGGGAAATGCGCGGCGGAACCGAGCAAACCCGGATCCGAAGGTGCCATTGCTTCGCCATTGGTGCCAGGCAACAACATCCCAACAACAGTGTCATCTTCACCAAGCACAATGCCAAAAACACCACCAACAAATAGCGGAAACCATCCAAATGGAGGTTCGAAAATAAGCCCAGTGGCTCTGATAGCCATTATAGTGGGCGATGTTGTTGTCCTTGGCATAGTGTGTGCGCTTCTCTATTGCTATTTCTGGAGAAACTACTCTGCTAAGTTGAAGGAGGGAAAAGTGTCCAAGCTTTTTGAGAGTGAAAAGATTGTATATTCATCGAGTCCGTACCCTGCTCAAGCAGGGTTTGAGAGGGGTCGAATGGTGTTCTTCGAAGGGGAGAAGAGGTTTGAACTTGAGGACTTGCTTAGAGCCTCAGCGGAAATGCTTGGGAAAGGTGGGTTTGGGACGGCGTATAAAGCGGTGCTTGATGATGGCAATGTTGTTGCGGTGAAGAGGCTTAAGGATGCGCAGATTGCAGGGAAGAGGGAGTTCGAGCAGCACATGGAAGTGCTTGGAAGACTAAGGCATCCCAACATTGTTAGCTTGAGGGCTTACTATTTTGCAAGAGATGAGAAGCTTCTTGTCTATGATTACATGCCCAATGCCAGTGTTTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACCAGGCTTAAAATAGCAGCTGGAGCAGCACGAGGTGTGGCTTTTATTCACAACTCCTGCAAGTCCCTTAGGCTCACCCATGGTAACATCAAATCCACCAACATCCTCCTTGACAAGCAGGGGAATGCACGCGTCTCAGATTTTGGGCTTTCCATATTTGCGGGCCCGGGCCCAGTGGGTGGGAGATCCAACGGCTACCGTGCTCCGGAGGCATCGGATGGTCGAAAACAATCCCAGAAGTCTGACGTGTACTCTTTTGGGGTTCTGCTGCTGGAGCTGCTCACGGGAAAGTGTCCCTCCGTGGTGGACAATGGTGGGGCAGTGGACCTACCAAGGTGGGTCCAGTCAGTGGTCAGAGAGGAATGGACGGCTGAGGTTTTTGATTTGGAGTTGATGAGATACAAGGATATTGAAGAGGAGATGGTGGGGCTGCTTCAGATAGCTATGTCTTGTACTGCGGCTGCACCTGATCAACGGCCTAGGATGAGCCACGTGGTCAAGATGATTGAGGAGTTGCGTGGGGTCGAAGTGTCTCCGTGTCATGACACGTTGGACTCGGTGTCTGAGTCACCTTCCTTGTCTGAAGATGCGTGTGGAACTAGTCAGTGA 1980 0.5197 MAAAPSHLIASFMVFHFLLLVQGSINPDFEALLAFKTASDTYKKLTTWNTNTDPCTWDGVSCIRNRVSRLVLENLDLQGSIEPLTSLTQLRVLSLKGNRFSGPLPSLSNFTALKLLFLSDNDFSGEFPLSVTSLFRLYRLDLSHNNFSGEIPAMVNRLTHLLTLRLDENQFSGNIPDVNLPSLQDFNVSGNSLSGEIPKSLSGFPESSFGQNPSLCGAPMGKCAAEPSKPGSEGAIASPLVPGNNIPTTVSSSPSTMPKTPPTNSGNHPNGGSKISPVALIAIIVGDVVVLGIVCALLYCYFWRNYSAKLKEGKVSKLFESEKIVYSSSPYPAQAGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRLRHPNIVSLRAYYFARDEKLLVYDYMPNASVFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLTHGNIKSTNILLDKQGNARVSDFGLSIFAGPGPVGGRSNGYRAPEASDGRKQSQKSDVYSFGVLLLELLTGKCPSVVDNGGAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDTLDSVSESPSLSEDACGTSQ. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07858 659 Gene3D Phosphorylase Kinase; domain 1 337 433 - -
Seca8g07858 659 MobiDBLite consensus disorder prediction 640 659 - -
Seca8g07858 659 MobiDBLite consensus disorder prediction 227 271 - -
Seca8g07858 659 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 631 IPR046959 -
Seca8g07858 659 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Seca8g07858 659 FunFam Nuclear pore complex protein NUP107 25 177 - -
Seca8g07858 659 FunFam pollen receptor-like kinase 1 330 433 - -
Seca8g07858 659 Gene3D Ribonuclease Inhibitor 25 86 IPR032675 -
Seca8g07858 659 Gene3D Ribonuclease Inhibitor 87 230 IPR032675 -
Seca8g07858 659 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 636 - -
Seca8g07858 659 SUPERFAMILY Protein kinase-like (PK-like) 362 626 IPR011009 -
Seca8g07858 659 Pfam Protein kinase domain 362 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07858 659 Gene3D Transferase(Phosphotransferase) domain 1 434 642 - -
Seca8g07858 659 ProSiteProfiles Protein kinase domain profile. 358 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07858 659 CDD STKc_IRAK 364 629 - -
Seca8g07858 659 ProSitePatterns Protein kinases ATP-binding region signature. 364 396 IPR017441 GO:0005524
Seca8g07858 659 MobiDBLite consensus disorder prediction 637 659 - -
Seca8g07858 659 MobiDBLite consensus disorder prediction 242 271 - -
Seca8g07858 659 SUPERFAMILY L domain-like 44 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07858 Seca-Chr8 175996561 175999834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07858 28 659 Receptor kinase-like Gene Family AT1G68400 68.606 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g07858 Pkinase 7.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07858 - - gmx:100779158 1098.57