Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07856 ATGATAAAAAAATTTGCATCTGCCTCTGGAGTAGGAGTTTTGATAATCTTGGCTTGGTGCTTTACAAGACGGTTGTTCAATAAGAAAAACCCCACACACCAAGTAATTGAGATGTTTCTAAAAAGCCATGGTCACCTTGCAGCCAAAAGATACAGTTATTTAGAGATAAAGAAGGCTACCAATTCCTTCAAAAACAAATTGGGTCAAGGAGGATATGGTAGTGTATACAAAGGGAAGTTACATGATGGAAGTCTTGTGGCAGTAAAAGTATTAAGTGAATCCAAAGGTAATGGGGAGGAATTCATCAATGAAGTTGCTAGTATCAGTGTCACTTCTCATGTTAACATTGTTAGTTTAGTGGGATTCTGTTTGGAAGGTTCTAAAAGAGCTCTCATATATGAATACATGCCTAATGGATCACTTGAGAATTTCATATATGAAGACAAAGATCCATTAAAGCTCAATCTCTTATTGAGTTGCAAAACTATCTACAACATTGCAATTGGAGTGGCTCGAGGATTAGAGTATTTGCACAAGGGTTGCAATACTAAAATCTTGCACTTTGATATAAAACCTCACAATATATTGTTAGACGAGTATTTCTGTCCCAAAATTTCCGATTTTGGACTTGCAAAAGTATGTCCAAGAAATGAAAGTATTGTGTCCTTATTGGGTACCAGAGGAACTGCTGGATACATTGCTCCTGAATTGTTCTCCAGAAATTTTGGTGGGGTCTCCCACAAATCTGATGTATACAGCTATGGAATGATGGTTTTAGAAATGGTTGGGGGAAGAAAGAATGCCAATGTTGAAGAAGTTGAATGTTCAAGTGAAATATATTTTCCACATTGGGTTTACAAGCGTCTTGAACTCAATCAGGAGCCTGGATTGCGATCCATCAGAAATGCTATTGATAAAGAAATGGTAAGAAAAATGATTATAGTGAGCTTATGGTGCATACAAACTGACCCATCAAATAGGCCAGCAATGAGTAAAGTGGTAGATATGATGGAAGGAAGCTTGGAATCCTTGGAAATACCACCAAAACCTTATCTCTCTTCTCCTCCCAGATCTCCCCCGAGATCATCAGATTATAACACACAAACATCTCAAGCTTTTTATCCTTGA 1128 0.3741 MIKKFASASGVGVLIILAWCFTRRLFNKKNPTHQVIEMFLKSHGHLAAKRYSYLEIKKATNSFKNKLGQGGYGSVYKGKLHDGSLVAVKVLSESKGNGEEFINEVASISVTSHVNIVSLVGFCLEGSKRALIYEYMPNGSLENFIYEDKDPLKLNLLLSCKTIYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDEYFCPKISDFGLAKVCPRNESIVSLLGTRGTAGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGGRKNANVEEVECSSEIYFPHWVYKRLELNQEPGLRSIRNAIDKEMVRKMIIVSLWCIQTDPSNRPAMSKVVDMMEGSLESLEIPPKPYLSSPPRSPPRSSDYNTQTSQAFYP. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07856 375 Pfam Protein kinase domain 64 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07856 375 FunFam serine/threonine-protein kinase PBS1-like 31 135 - -
Seca8g07856 375 SUPERFAMILY Protein kinase-like (PK-like) 41 337 IPR011009 -
Seca8g07856 375 Gene3D Phosphorylase Kinase; domain 1 37 135 - -
Seca8g07856 375 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Seca8g07856 375 ProSiteProfiles Protein kinase domain profile. 61 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07856 375 SMART serkin_6 61 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07856 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Seca8g07856 375 PANTHER RUST RESISTANCE KINASE LR10-RELATED 33 358 IPR045874 GO:0004672
Seca8g07856 375 Gene3D Transferase(Phosphotransferase) domain 1 136 346 - -
Seca8g07856 375 MobiDBLite consensus disorder prediction 345 375 - -
Seca8g07856 375 MobiDBLite consensus disorder prediction 358 375 - -
Seca8g07856 375 FunFam PR5-like receptor kinase 136 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07856 Seca-Chr8 175985138 175993945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07856 49 371 Receptor kinase-like Gene Family AT4G18250 58.559 2.81e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g07856 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07856 - - gmx:100785979 624.78