Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07854 ATGCCTCCACTTGATCTGTTCCCCTTCGTCTTGTTTTGTCACCTTCTAGTTCTAATACTGATTTTCTCCGCTGGGTATGGAAATGGGTACCAATATAACTGTTCACGCTCCTTCACTTGTGGAAATATTGGGACTTTCCATTACCCTTTCACCAAGGCTGAACAACCAGACTGTGGCTTGCTACTCATACAAGGCTGTGATGATGATGATCACTATTCACCCAAAAAGATTCAACTGGGGAGGAATGAAACACCCATAGTGCTTACGGGCATGGTAGACCAGAAAACAATTACGCTTTTTGATGAAGGTTTTCACAGGCTTTTGCAAGACAATACTTGTGACACTTTGAAAAATAGTTACACCCTTCCTTCCCCTTCTCCTTTGGTTTCCTTTTATATAAAATATAACGTAACCCTGTTCCGATGCAAACGCAGCCTCAAAATCAAGCCCCCTAAAGATTATTTTCATCACAATTGCAATGACTACGATGTCTATTATGACAGCCATGCTCCCTATCCGAATGAGGAGGCTCGTAGGCTTTTCTCATCCTGCTCCGTTCTTCAGTATCCAACAAAAGACGTAACTGATACCAAAGACATTCTATCGTTTTTATCTGGTCAATTGGCTGTTGAAGTTGTATTATCTGATGATTGTGATGACTGCTACAACCACAGAGAAGGCCAATGTCAGCTTGACAGCAATAAAAAGTTCTACTGTGATCAAGAGCCAAAGAAGAAGAGAACAAAGTTGAACCTGCTACTTGGACTTGGAATAGCTGTTGCATTGCTGTTGCTCTTGGCTTTGAACCTTACATTTCGTTGCTTGCGGAAAAAAAATTGTGCGACCGGTGAACTGTTTATTGAGAGGTTCCTAAAGCAACACGGTTCTCTTCCAACCACAAGGTACAGTTACTCTCAGATAAAGAAAGTCACTGATTGTTTCAAAGTCAAATTAGGTGAGGGAGGATATGGAAGCGTATATAAAGGAAAGCTACAAGATGGGAGTTCTGTTGCAGTCAAGGTTTTAAATGAACTTAAAGGAACTGGGGAGGAATTCATCAATGAAATTGCAAGCATTAGCAGGACATCTCATGTTAACATTGTCACTCTTGTGGGGTTTTGTTTCCAAGGTTCAAAACGAGCTTTAGTTTATGAATTCATGCCTAATGGATCCCTTGAGAAGTTCATATGTGAAGAAACTCCAATGTTAGTTGGTCAGCAATTGGCATGCAAGACTTTGTATGATGTTGCCATTGGTGTTGCTCGTGGATTGGACTATTTGCACAGAGGCTGCAATACTAAAATCTTGCATTTTGATATCAAACCTCACAACATACTACTTGATGAAGATTTCTGCCCAAAGATTTCAGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAGAGTATTGTGTCCATGTTGGGTGCAAGGGGAACGATTGGATATATTGCTCCAGAGGTGTTTTGTAGGACTTTTGGTGGGGTGTCTCATAAATCTGATGTATACAGTTATGGAATGCTAGTTTTAGAAATGGTTGGAGGGAGACAGAATAAAAATGTTGAACTTGATTGTTCTAGTGAGATATATTTTCCACATTGGATTTATAAGAAACTTGAATTAGATCAAGATTTTGGATTTCGGTGTATTGAAAATGAAAGTGACAGAGTAATTGTGAGAAAGATGATCATGGTGAGCTTATGGTGCATACAAACGGACCCTTTAGCTCGACCATCTATGAGTAAAGTGGTGGAGATGCTAGAAGGAAGCCACGAGTCCTTGAAAGTACCACCTAAACCCTTCTTGCGTTCTCCACCAACATCTCCAGCACATTACTCCAGCTCAAAGTGTCCGCAGTCTTTTCATTGTGGAAGTCATGGGCAGATCAGCTTTCCTTTCACAGACAGAGAGCACCCACAATGTGGCGCGTTATTAGCCATACATGGCTGTCATGTAAAGGATCCAGCTGCTCCCAAAACCATCCAACTAACCAACACGCCATCAAAACGGTCTTTTAATGTTCTCCTCATGGGTCGTTCTTCCATAACGGTCAATGATAATGATCAACAAAAAAATTTGGAGAACAATAGTTGCAAAACCTTCTTCAACAATTTTGCTCTTCCTCCCCCCTCTCCTTTAGCTTCTTTCTATGTAAGTAATAACATAACTATGTTCAGCCTTCCAAATACTAACATGTCTCCCAGTTTCAAATGGCCAAGTTTTTTGGCATCGCCATCCTGTTCAGCGGTTCAGGTTGCAGTAAAAGGGGAGCCAACTGATAACCCCTTTGATTTTCTAGCTCCTGAGCTCCTCATTGAAGTACAACTATCTGATGATTGTAATCATTGTCTTCGTCACAAAGGGGGACAATGTCAACTTGACATTCAAGGAAAATTCTATTGCTCCAAAGGGAGTAGAGGTTGGGTTGTGAAAATGGTACTAGGGCTCGGAACAGGAGGTAACGTACATAGATTAATCTTCCTTTCCGAATTTAGTACAGTTCTTTTTCACCTTAAAGGGAAAAATAAGGAATTTTAA 2535 0.4055 MPPLDLFPFVLFCHLLVLILIFSAGYGNGYQYNCSRSFTCGNIGTFHYPFTKAEQPDCGLLLIQGCDDDDHYSPKKIQLGRNETPIVLTGMVDQKTITLFDEGFHRLLQDNTCDTLKNSYTLPSPSPLVSFYIKYNVTLFRCKRSLKIKPPKDYFHHNCNDYDVYYDSHAPYPNEEARRLFSSCSVLQYPTKDVTDTKDILSFLSGQLAVEVVLSDDCDDCYNHREGQCQLDSNKKFYCDQEPKKKRTKLNLLLGLGIAVALLLLLALNLTFRCLRKKNCATGELFIERFLKQHGSLPTTRYSYSQIKKVTDCFKVKLGEGGYGSVYKGKLQDGSSVAVKVLNELKGTGEEFINEIASISRTSHVNIVTLVGFCFQGSKRALVYEFMPNGSLEKFICEETPMLVGQQLACKTLYDVAIGVARGLDYLHRGCNTKILHFDIKPHNILLDEDFCPKISDFGLAKICPRKESIVSMLGARGTIGYIAPEVFCRTFGGVSHKSDVYSYGMLVLEMVGGRQNKNVELDCSSEIYFPHWIYKKLELDQDFGFRCIENESDRVIVRKMIMVSLWCIQTDPLARPSMSKVVEMLEGSHESLKVPPKPFLRSPPTSPAHYSSSKCPQSFHCGSHGQISFPFTDREHPQCGALLAIHGCHVKDPAAPKTIQLTNTPSKRSFNVLLMGRSSITVNDNDQQKNLENNSCKTFFNNFALPPPSPLASFYVSNNITMFSLPNTNMSPSFKWPSFLASPSCSAVQVAVKGEPTDNPFDFLAPELLIEVQLSDDCNHCLRHKGGQCQLDIQGKFYCSKGSRGWVVKMVLGLGTGGNVHRLIFLSEFSTVLFHLKGKNKEF. 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07854 844 Gene3D Phosphorylase Kinase; domain 1 291 386 - -
Seca8g07854 844 SMART serkin_6 312 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07854 844 FunFam PR5-like receptor kinase 387 598 - -
Seca8g07854 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Seca8g07854 844 FunFam serine/threonine-protein kinase PBS1-like 288 386 - -
Seca8g07854 844 ProSiteProfiles Protein kinase domain profile. 312 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07854 844 Gene3D Transferase(Phosphotransferase) domain 1 387 596 - -
Seca8g07854 844 Pfam Protein kinase domain 316 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07854 844 SUPERFAMILY Protein kinase-like (PK-like) 296 587 IPR011009 -
Seca8g07854 844 PANTHER RUST RESISTANCE KINASE LR10-RELATED 287 607 IPR045874 GO:0004672
Seca8g07854 844 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07854 Seca-Chr8 175966023 175972014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07854 31 618 Receptor kinase-like Gene Family AT5G38260 39.583 1.23e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g07854 Pkinase 6.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07854 - - gmx:100784387 753.821