Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07853 ATGACTCCAGTTTATGAATTTCTCTTCCTTTTGTTTTGTTACCTTATGCTGCCTCTCTTGGCGGCTCAAGATGGGAATGGAGTGTGTCCACCTTCATTTAATTGTGGATATCTTGGCAATATCAGCTTCCCTTTCACTAAAACAGAACGCAACCACTGTGGCTTATTGGCCATACATAATTGTGATGATCCTAATCCAGTGAAGCCCAGAATGATCCAATTTCAGAATAAAGGGAAATGGTTTGAGGTTGTACACCTTTCTCAGTTTCCCCATGTTACTTCACTATTTAGAGACAAGGATCTGTATGGACTCCTTCAAAACAGAAGTTGTGATGCTTTCAGATATAATTATACTCTTCCTCCAAGCTTCCCCTTTGGTTCTTTTCATATCGAATACAACGTAACCATGTTCAGCTGCAACCGCACCCTCCATGTCAGGTCCCCAACGTACATGCATAATTATACAAAGTGCCCTGACTACGATCTCTACTACAATCCTTTCAGCACTGCTGATGATGCTTTGACAGCATGTACAAAGGTCCAGCTTCCAATTAAAGATGTCCCTGACGCCAAAGACCCATTTACATTCGTAACTGCTGATATCTTCACTCAAGTAAACATAACCAAGGAATGTGTAAATTGTCACTATTACCTAAAAGGGAGGTGTCAACTTGACAGAAGAGACAAATTTTGCTGTGCCAATGTTATAGAGAAAAAAAGGTTGAGTCGGAAGGCCAAACTGGGTATAGGTTTAGGTATTGGAATCCTAGGCATCGTGATAATTGGGTTGCTGCTTCTCCTTCTACTCTACAAACGAAAACATGCTACCTCAGGTGGACACTTCCAATCTAATAATTCTTATTCTGATTCCTCCTTACATTCACGCAGAGAAAGTGGTAGTGTGTACTTTGGAGCTCCAGTCTTCTCATACGAGGACCTTAAAAAAGCAACAAACAATTTTGACCATACTAAAGAACTTGGAGATGGAGGCTTTGGCACTGTCTACTACGGGAAACTCCCAGATGGACGTGAAGTTGCTGTGAAGCGCTTATATGAGCACAACTATAGGCGTGTAGAACAGTTTATGAATGAAGTTGAGATCCTCCAACGTTTGCGTCACAAAAATCTTGTGTCCCTCTATGGCTGCACTTCAAGGCACAGCCGTGAACTACTGCTTGTGTATGAATTCATTTCCAATGGCACCGTTGCTTGTCATCTCCATGGTGGATTAGCCAAGCCTGGCTTACTACCATGGTCCATAAGAATTAAAATTGCCATTGAGACTGCTACTGCATTGGCTTATCTCCATGCTTCTGACATCATTCACCGTGATGTCAAAACCAGCAACATACTCCTTGACAGCAATTATTGTGTTAAAGTTGCAGACTTTGGCCTTTCAAGACTATTCCCTGAACATGTCACTCATGTTTCCACAGCTCCACAAGGGACCCCAGAGGGGACCCCAGGTTATGTTGACCCTGAATATCACCAAAGCTACCAGCTTACTAGCAAGAGTGATGTCTATAGCTTTGGGGTTGTGCTTGTTGAGCTGATATCATCTATGCCAGCGGTTGATATGACTCGGCATAAGGATGAGATAAACTTGGCAAATCTGGCTATAAGGAAGATTCAGAAAAGTGCATTTGGTGAGCTGGTAGATCCTTCTCTTGGTTTTGATTCAGACAATGAGGTTAAGAGGATGATTGTCTCGGTGGCAGAATTGGCTTTTCAATGTTTGCAAAGGGACAAGGAATTGAGACCTTCCATGGATGAGGTTTTGAAGGTGCTGATTAGAATTGAAAGTGGGAAGGATGTAGCTGAGCATCTAGAGGAAATCCCTCTCTTCTCTTACAAGGAGCTTGAAGAAGCCACAAATAATTTCCACCACGCCAACCAACTTGGAAGTGGAGGCTTTGGAACAGTTTACTATGGAAAACTTCGAGATGGAAGGGAAGTTGCTGTGAAGCGCCTATATGAGCACAACCACAGGCGAGTACAACAGTTCACAAATGAAATTGAGATCCTTACTCGCATGCGCCATACAAATCTTGTGTCCCTCTATGGCTGCACTTCACGTCGCAGTCATGAACTACTTCTTGGGTACGAATATGTTCCAAATGGCACTGTTGCTTGTCATCTCCATGGTGATTTAGCAGCCACACTGCCTTGGCATGTAAGAATGAAAATTGCTATTGAGACCGCCAGTTCATTGGCTTATCTTCATGCTTCTAACATCATCCACCGTGATGTCAAAACCAAAAACATTCTCCTTACCAACACTTTCAGTGTCAAAGTTGCAGACTTTGGCCTTTCAAGGTTATTCCCTAATGATGTCACACATGCCTCCACAGCACCACAGGGGACCCCAGGTTATGTTGACCCTGAATATCACCAAAGCTACCAGCTTACTAGCAAGAGTGATGTCTATAGCTTTGGGGTTGTGCTTGTTGAGCTGATATCATCTATGCCAGCGGTTGATATGACTCGGCATAAGGATGAGATAAACTTGGCAAATCTGGCTATAAGGAAGATTCAGAAAAGTGCATTTGGTGAGCTGGTAGATCCTTCTCTTGGTTTTGATTCAGACAATGAGGTTAAGAGGATGATTGTCTCGGTGGCAGAATTGGCTTTTCAATGTTTGCAAAGGGACAAGGAATTGAGACCTTCCATGGATGAGGTTTTGAAGGTGCTGATTAGAATTGAAAGTGGGAAGGATGTAGCTGAGCATCTAGAGGAGGAAGATGTAAGAACACCCTCTCCACCTTCACCAGATTGGGATGAGAATGAATTATTGAAAAGAATGATGATACCTCCTTCACCAAAAGCCGTGACTGATAGATGGGATAGTAAATGTACTACACCTAATGCCAGTGGTTAA 2877 0.4289 MTPVYEFLFLLFCYLMLPLLAAQDGNGVCPPSFNCGYLGNISFPFTKTERNHCGLLAIHNCDDPNPVKPRMIQFQNKGKWFEVVHLSQFPHVTSLFRDKDLYGLLQNRSCDAFRYNYTLPPSFPFGSFHIEYNVTMFSCNRTLHVRSPTYMHNYTKCPDYDLYYNPFSTADDALTACTKVQLPIKDVPDAKDPFTFVTADIFTQVNITKECVNCHYYLKGRCQLDRRDKFCCANVIEKKRLSRKAKLGIGLGIGILGIVIIGLLLLLLLYKRKHATSGGHFQSNNSYSDSSLHSRRESGSVYFGAPVFSYEDLKKATNNFDHTKELGDGGFGTVYYGKLPDGREVAVKRLYEHNYRRVEQFMNEVEILQRLRHKNLVSLYGCTSRHSRELLLVYEFISNGTVACHLHGGLAKPGLLPWSIRIKIAIETATALAYLHASDIIHRDVKTSNILLDSNYCVKVADFGLSRLFPEHVTHVSTAPQGTPEGTPGYVDPEYHQSYQLTSKSDVYSFGVVLVELISSMPAVDMTRHKDEINLANLAIRKIQKSAFGELVDPSLGFDSDNEVKRMIVSVAELAFQCLQRDKELRPSMDEVLKVLIRIESGKDVAEHLEEIPLFSYKELEEATNNFHHANQLGSGGFGTVYYGKLRDGREVAVKRLYEHNHRRVQQFTNEIEILTRMRHTNLVSLYGCTSRRSHELLLGYEYVPNGTVACHLHGDLAATLPWHVRMKIAIETASSLAYLHASNIIHRDVKTKNILLTNTFSVKVADFGLSRLFPNDVTHASTAPQGTPGYVDPEYHQSYQLTSKSDVYSFGVVLVELISSMPAVDMTRHKDEINLANLAIRKIQKSAFGELVDPSLGFDSDNEVKRMIVSVAELAFQCLQRDKELRPSMDEVLKVLIRIESGKDVAEHLEEEDVRTPSPPSPDWDENELLKRMMIPPSPKAVTDRWDSKCTTPNASG. 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07853 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Seca8g07853 958 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Seca8g07853 958 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 603 IPR044652 GO:0004672
Seca8g07853 958 ProSiteProfiles Protein kinase domain profile. 627 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07853 958 Gene3D Transferase(Phosphotransferase) domain 1 704 918 - -
Seca8g07853 958 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 292 396 - -
Seca8g07853 958 SUPERFAMILY Protein kinase-like (PK-like) 295 597 IPR011009 -
Seca8g07853 958 FunFam Wall-associated receptor kinase-like 20 704 910 - -
Seca8g07853 958 Pfam Protein kinase domain 627 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07853 958 Pfam Protein kinase domain 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07853 958 Gene3D Phosphorylase Kinase; domain 1 599 703 - -
Seca8g07853 958 Gene3D Phosphorylase Kinase; domain 1 285 396 - -
Seca8g07853 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Seca8g07853 958 ProSiteProfiles Protein kinase domain profile. 320 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07853 958 MobiDBLite consensus disorder prediction 909 931 - -
Seca8g07853 958 ProSitePatterns Protein kinases ATP-binding region signature. 633 655 IPR017441 GO:0005524
Seca8g07853 958 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 598 703 - -
Seca8g07853 958 SMART serkin_6 320 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07853 958 SMART serkin_6 627 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07853 958 FunFam Wall-associated receptor kinase-like 20 397 608 - -
Seca8g07853 958 SUPERFAMILY Protein kinase-like (PK-like) 610 897 IPR011009 -
Seca8g07853 958 MobiDBLite consensus disorder prediction 909 958 - -
Seca8g07853 958 Gene3D Transferase(Phosphotransferase) domain 1 399 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07853 Seca-Chr8 175939058 175958351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07853 596 958 Receptor kinase-like Gene Family AT1G25390 63.144 1.73e-150 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca8g07853 Pkinase 7.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07853 - - ahf:112712053 752.666