Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07823 ATGGGTTTGCAAAACCAGTTAAACGACGTGTCGTCGGATTCGATTCCGTTGCTGGTGTTGGCGCAAATCGCCACCTGCGTCAGCTACCTCCGCTCCATGCTCCTCGCTCTCCTCCAATCACTCGGTCTCTGCAGGTTCTACACCGACCAGATCGTTGACGACAGCTTCTATGCCGCCGTTGGATCCCGCTTCGCCGGAATCATCATGCTCTCCGATCAGCTCACCCTCAACAAGCAATTATCCTACGAAAAAGGCGCCACCGATGACGACCAGGACTGCGTTGTGTGCAAATCCACCTTCAAGGACGGAGACCACGTTCGTATGCTTCCTTGCCGCCATGTCTACCACCGCCGATGCTTCGACGGATGGCTTCACCAGTACAAGTTCAACTGTCCCATCTGCCGCTACAATCTCATCTCTGACGAGCGCGTGGCTCTCACGGAGCGCCGTGTCGGTAGCCAACTCATCTCCTGGTTTTCCCTGCGTTGA 489 0.5583 MGLQNQLNDVSSDSIPLLVLAQIATCVSYLRSMLLALLQSLGLCRFYTDQIVDDSFYAAVGSRFAGIIMLSDQLTLNKQLSYEKGATDDDQDCVVCKSTFKDGDHVRMLPCRHVYHRRCFDGWLHQYKFNCPICRYNLISDERVALTERRVGSQLISWFSLR. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07823 162 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Seca8g07823 162 CDD RING-H2_RNF103 87 141 - -
Seca8g07823 162 PANTHER - 78 146 - -
Seca8g07823 162 Pfam Ring finger domain 92 135 IPR001841 -
Seca8g07823 162 SMART ring_2 93 134 IPR001841 -
Seca8g07823 162 SUPERFAMILY RING/U-box 80 141 - -
Seca8g07823 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 140 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07823 Seca-Chr8 175631892 175632380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07823 1 161 C3H Transcription Factor Family AT1G15100 48.765 2.05e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07823 K16282 - gmx:100797628 237.654