Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07804 ATGTCCTCCACCAGGAGAGGAAGGTCTGCTTCACCAAATGACTCTGTATCTCCGGTTAGAGGCCGTCGATCAAGATCATTATCAAGGACTAGGAGGAGAAGTCGTTCCAGGAGTCCAGATTCTGTCGATGCAGCGAATCCTGGAAATAATTTGTATGTAACAGGCTTGTCCACGAGGATCACAACCAGCGAACTTGAGAAGTATTTCAACAAAGAGGGAAAGGTTGTTGAGTGCAACCTGGTAACAGATCCTCATACCAAAGAATCTCGTGGATTTGGTTTTGTCACTATGGAAACCAAAGATGATGCTGAGCGCTGTATCAAGTATTTGAACCGTTCTGTTTTTGAAGGTCGACTGATAACTGTGGAAAAGGTAATATTTAGCACCAATTGCTCCAGACTGAGTCAAGTCAAATGA 417 0.4388 MSSTRRGRSASPNDSVSPVRGRRSRSLSRTRRRSRSRSPDSVDAANPGNNLYVTGLSTRITTSELEKYFNKEGKVVECNLVTDPHTKESRGFGFVTMETKDDAERCIKYLNRSVFEGRLITVEKVIFSTNCSRLSQVK. 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07804 138 CDD RRM_SF 51 123 - -
Seca8g07804 138 MobiDBLite consensus disorder prediction 1 52 - -
Seca8g07804 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Seca8g07804 138 Gene3D - 2 130 IPR012677 -
Seca8g07804 138 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 34 124 - -
Seca8g07804 138 SUPERFAMILY RNA-binding domain, RBD 7 124 IPR035979 GO:0003676
Seca8g07804 138 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g07804 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 123 IPR000504 GO:0003723
Seca8g07804 138 SMART rrm1_1 50 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07804 Seca-Chr8 175322033 175324104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07804 37 130 Eukaryotic Initiation Factors Gene Family AT2G36660 34.043 3.94e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07804 K12897 - qsu:111986068 172.94