Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07789 ATGGGGGATCACTTTAATTTGCTGGTTGATCGATTGATTACTGAATCTACATTAGAAGCTGCAATTGAAAGCAGAAAGAGGTCAATGCAGGCTGCATCCTCAGCAGTGAATGATACAGAAGTTAACCCCTCTTTGATGAAGGTGGGTGTGGATGATATCAAATGTCCAGGGAAACTGGTAGAATGCAGGATATGTCATGATGATGATGAAGATTCCAATATGGAGACACCCTGCTCCTGTTGTGGCAGTTTGAAGTATGCCCACCGTAAATGTATACAACGATGGTGTAATGAGAAAGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAACTGGGAGATTTCAAGAAGAGACCTAAATAGTACTCATTTGGTTAGCATGGTTCCCACCGACCAGAACCTTACCAATTCTAACTATGATCAATATTCAGCCTCTACTTCAGGAAGTTTCATATGCTGTCGTTCAGTTGCTATCATTGTAATCTCTCTCATTCTCTCAAGTACTAATGCCACTGTGCCTTTACACCTGTTGGCTATCACATTTCTCAATCTTCATTTCTTCTCATGTGCAGTTCATGGTTCTACTGATTCTAAGACATGCACTTCCCCTTGTAATCAGTGGAAATAA 696 0.4181 MGDHFNLLVDRLITESTLEAAIESRKRSMQAASSAVNDTEVNPSLMKVGVDDIKCPGKLVECRICHDDDEDSNMETPCSCCGSLKYAHRKCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTNSNYDQYSASTSGSFICCRSVAIIVISLILSSTNATVPLHLLAITFLNLHFFSCAVHGSTDSKTCTSPCNQWK. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07789 231 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Seca8g07789 231 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 191 IPR033275 -
Seca8g07789 231 FunFam Zinc finger family protein 50 117 - -
Seca8g07789 231 CDD RING_CH-C4HC3_MARCH 62 108 - -
Seca8g07789 231 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Seca8g07789 231 Pfam Protein of unknown function (DUF3675) 113 188 IPR022143 -
Seca8g07789 231 SUPERFAMILY RING/U-box 60 112 - -
Seca8g07789 231 SMART ringv_2 61 108 IPR011016 GO:0008270
Seca8g07789 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 117 IPR013083 -
Seca8g07789 231 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07789 Seca-Chr8 175163459 175167555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07789 51 108 C3H Transcription Factor Family AT2G37950 45.902 7.12e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07789 - - vun:114190540 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07789 8 175163459 175167555 Seca8g07789 8 175163459 175167555 ECH