Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07780 ATGGTGGCTTTTGGCGGGAAAAAAGTTGGCCAAATGGTCGTCGGCTTCGGCGGCAGTGGTCTCGGCCAGGTCGTCATCGCCGTCACCGTCTCCTTCCTTGTCCGCGTCTTCTCTGCTCCCGGCCCCGCCCTCTTGCCGGAGAACGACGATGACGACGATGTGCCGAACAACGATTCCCACAACGGTGAAACTTCGCCCTCCGGAAAGGTCACGCCGGTCACAATCCGCTGGAACAGTATCAATTGTTCCCTTTCTGATAAATCCTCCAAGTCCGTGAGGTTTTTGCTTAAAAATGTGAGCGGAGAAGCGAAGCCTGGAAGATTGTTAGCCATAATGGGGCCTTCAGGTTCAGGGAAGACAACGTTGCTTAATGTTCTTGCGGGTCAGCTGGGAGCATCGCCATGGCTGCATTTGACGGGCCTTTTGGAGTTCAATGGAAAGCCTCGTTCCAAAAACCCTTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTTTTCTCACAGCTCACAGTGCGGGAAACATTGTCTCTTGCTACAGAACTCCAGCTTCCCGACCTATCTTCCGCAGAAGAGAGAGATGAATATGTGAACAATCTCCTTTTCAAACTAGGCTTGATCAGTTGTGCTGATACCAATGTCGGTGATGCAAAAGTTCGTGGAATTAGCGGTGGTGAAAAGAAACGCTTATCAATGGCATGTGAATTGCTTGCAAGCCCGTCTGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTCATGGAAACACTCCAGCAACTTGCACAAGATGGTCATACTGTAATTTGCTCTATACATCAGCCAAGAGGTTCAGTGTATAGTAAATTCGATGACATTGTCTTGCTGACTGAGGGTTCACTTGTTTATGCTGGTCCTGCTCGTGATGAAGCATTGGCATACTTCTCAAGATTCGGGTACAGCTGCCCAGATCATGTAAATCCTGCTGAATTTTTGGCTGATCTTATATCCATCGACTATAGTTCTGCTGATAGTGTCTATTCCTCTCGAAAAAGGATTGATGGGCTTGTGGAGTCATTCTCACAAAAACTATCTACAGTAATATATGCAACTCCAATTACTATAGACGATCTCTCAAAAAGTAGAAAGCAAATCAGCAAGAGGACTGTAGCAAAGAAGAAAGGAGGTTGGTGGAAGCAATTTTGGTTGCTCCTTAAACGAGCTTGGATGCAGGCTTCCCGAGATGCACCTACCAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCAGTTTTTTGGAGAATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTGCTGCAATAAATACAGCTATGGCTGCTCTCACAAAGACTGTAGGTGTGTTTCCCAAGGAACGGGCAATTGTTGATAGAGAACGTGCTAAAGGCTCCTATTCCTTGGGTCCATATCTGTTTTCAAAATTGTTGGCTGAGATTCCCATCGGAGCAGCATTTCCATTAATGTTTGGTGCAGTTTTGTATCCAATGGCACGTCTTCATCCTACTTTGACCAGATTTGGGAAGTTTTGTGGAATTGTCACTGTGGAATCTTTTGCTGCATCTGCGATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTTTTTATTGTATTTGGTGGCTACTATGTCAATCCTGAGAATACCCCAATCATCTTCCGCTGGATTCCTAGTGTTTCTCTGATTAGATGGGCTTTTCAGGGTCTTTGCATCAATGAATTTAGTGGCCTTCAATTTGATCATCAGCATTCATTTGATGTTCAAACTGGAGAACAGGCACTGGAGCGTATTTCCTTTGGAGGAAGTAGGATTAGGGATACGGTGGTAGCACAAAGTAGAATACTGTTATTTTGGTATTGCACCACCTACCTTCTCCTTGAGAGAAACAAGCCCAGATACCAGCAACTTGAAACAACCCCTCTTGACCATGACGAACCCCATTTAAAACTTGAGGAGTTCAATTCTAAACAAGTTCATCAGGCACTTGAAGCTACACCAGTCAGCCAAGTTGCTTCCGACCAGCCCCTTGAGTCACCTGAAGTAGATCTTGTTGGCTCTTTTGTCCTAGAAGGTGCTAAGTAG 2184 0.456 MVAFGGKKVGQMVVGFGGSGLGQVVIAVTVSFLVRVFSAPGPALLPENDDDDDVPNNDSHNGETSPSGKVTPVTIRWNSINCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLGASPWLHLTGLLEFNGKPRSKNPYKFAYVRQEDLFFSQLTVRETLSLATELQLPDLSSAEERDEYVNNLLFKLGLISCADTNVGDAKVRGISGGEKKRLSMACELLASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYSKFDDIVLLTEGSLVYAGPARDEALAYFSRFGYSCPDHVNPAEFLADLISIDYSSADSVYSSRKRIDGLVESFSQKLSTVIYATPITIDDLSKSRKQISKRTVAKKKGGWWKQFWLLLKRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGAVLYPMARLHPTLTRFGKFCGIVTVESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSVSLIRWAFQGLCINEFSGLQFDHQHSFDVQTGEQALERISFGGSRIRDTVVAQSRILLFWYCTTYLLLERNKPRYQQLETTPLDHDEPHLKLEEFNSKQVHQALEATPVSQVASDQPLESPEVDLVGSFVLEGAK. 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07780 727 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 63 623 - -
Seca8g07780 727 FunFam ABC transporter G family member 7 73 311 - -
Seca8g07780 727 Pfam ABC-2 type transporter 398 608 IPR013525 GO:0016020|GO:0140359
Seca8g07780 727 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524|GO:0016887
Seca8g07780 727 Gene3D - 69 312 IPR027417 -
Seca8g07780 727 CDD ABCG_EPDR 72 303 - -
Seca8g07780 727 MobiDBLite consensus disorder prediction 44 71 - -
Seca8g07780 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 307 IPR027417 -
Seca8g07780 727 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 321 IPR003439 GO:0005524
Seca8g07780 727 SMART AAA_5 105 298 IPR003593 GO:0016887
Seca8g07780 727 Pfam ABC-2 type transporter 278 334 IPR043926 GO:0140359
Seca8g07780 727 Pfam ABC transporter 96 248 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07780 Seca-Chr8 175074885 175088306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07780 95 303 Calmodulin-binding Proteins AT2G36910 27.230 3.96e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07780 K05681 - gmx:100788256 1276.92