Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07775 ATGCTAGGTTCATTGCCTATACTTCCTCTCCCTGCTCCTCCGTCTGATGGAAATCTTGGTCCTCTCCCTGAGTCTCAAGTGTCTAATGAGGAGAGGGATGAGAAAACATCCAATGAAGAGCAGAACAAAGTAAATTCAGCTTCTGCTCCAGCACCAGCAACAGTTGCCACACACACTAGAACTATTGGAATTATTCATCCCCCTCCTGACATTAGAACCATAGTTGATAAAACTTCCCAGTTTGTGGCTAAAAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGCAATGCCAAATTTAATTTCCTGAACCCATCGGATCCTTATCATGCATATTATCAACACCGGTTGACTGAATTTCGCGCTCAGAATCAATCTTCTGCTCTGCAACCCCCTTCGCAACCTGAAGACTCAGCTGCTCCTGAATCAGCCCCATCTGCACTAGCCCCTGATAGTAATGGTGTAGCAGCAGCAGCAGCAGAAAAGCCTGATCTTTCTGCCCAGTTTAAACCAGTAAAGAAAGTACTTGAGCCCCCAGAGGCTGAGCAGTATACAGTAAGGCTTCCTGAAGGAATTACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCTTTTTTGACAGGATTGACAAGTAGGGAAGTTAATAACCCTCAATTCCATTTCTTGAAACCAACCCACAGTATGTTTACGTTTTTTACTTCCCTTGCGGATGCATATTCAAAGGTTTTGATGCCTCCAAAGGGTTTGACGGAGAAGCTGAGGAAGAGTGTCTCTGACATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTTGAATGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAGCAGGAAAGAATACAGATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAATTACCTCCTCCAATGACTATTGAGGAGGTGATAAGGAGAAGCAAGGTGTCAACCATGGAAGAAGATATTGTTGAGCCTGGAAAGGAAGTAGAAATGGAAATGGATGAAGAAGAGGCCCAGCTTGTTGAAGAGGGCATGAGAGCTGCTAGTTTGGAAGACAATGATGACGGGAAGAAGAACGAAGTCAGGGTTACTGAAGACCCTGAACCGCCAATGAGGATTGTGAAGAACTGGAAGAGACCAGAGGAGAGGGTTCCCACAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTAATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATCGTCGGACTTGCTCGGACCCGTCCTGATATCTTTGGTACTACAGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAGATAGAGAAGAAAAATGATGAGCAACCGAAGCAGGTTATATGGGATGGTCACACTGGTAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAATATTGGGAATGAGGATCAAAATGATACTTCTAATAATGAAGCCAAGAACCTTCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGCATGCCTTCAGTTCGTCCTCTTCCGCCACCACCTGGACTAGCATTGAATCTTCCTCGTGTTCCTGTCAATGCTGTTCAGTATTCTGCACCTAACAGTGGTGGCCTTCCAATTCCTCCACCAAGGCCACCTGTCATGCCTATGATGCCATCTGTCCGGCCAGTCCCCCCTCCTCCAATGCCAATGACTTCTGGACAGCAGTCAATTATGGCTGGTCAACCACCCCCAATGCACCCATCAATTCCTATGAATAGCCAAGGAATTCACATACCTCCACCACCTGGATCTCAGTTCACCCCTGTTCCAGTTCCACGACCTTTTATGCCTCTTCCACCATCAGTGATGCCTATGATGCATCCACCACCTTTGCCACAAGGAGTACTGCCGCCGCCGCCGCCACCTGAGGAAGCTCCTCCCCCACTCCCAGATGAACCAGAACCAAAGAAGCAGAAGCTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAGCATCCGGGACCTGTTCGCATCGGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACAGTGCAATCTCTGTCTGAAACTGTTGGCAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAGCTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGATAATATTTCACTTGCTCATTACAACATTAGTGGAGGAGAAACACTTGCCCTAACCTTAAGAGAGCGTGGTGGTAGAAAGAGATGA 2460 0.4569 MLGSLPILPLPAPPSDGNLGPLPESQVSNEERDEKTSNEEQNKVNSASAPAPATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNAKFNFLNPSDPYHAYYQHRLTEFRAQNQSSALQPPSQPEDSAAPESAPSALAPDSNGVAAAAAEKPDLSAQFKPVKKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLRKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEEVIRRSKVSTMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDDGKKNEVRVTEDPEPPMRIVKNWKRPEERVPTERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQNIGNEDQNDTSNNEAKNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRVPVNAVQYSAPNSGGLPIPPPRPPVMPMMPSVRPVPPPPMPMTSGQQSIMAGQPPPMHPSIPMNSQGIHIPPPPGSQFTPVPVPRPFMPLPPSVMPMMHPPPLPQGVLPPPPPPEEAPPPLPDEPEPKKQKLDDSALIPEDQFLAQHPGPVRIGISVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNISLAHYNISGGETLALTLRERGGRKR. 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07775 819 Pfam Surp module 72 123 IPR000061 GO:0003723|GO:0006396
Seca8g07775 819 Pfam Surp module 200 251 IPR000061 GO:0003723|GO:0006396
Seca8g07775 819 ProSiteProfiles SURP motif repeat profile. 74 116 IPR000061 GO:0003723|GO:0006396
Seca8g07775 819 Gene3D Surp module 58 131 IPR035967 GO:0003723|GO:0006396
Seca8g07775 819 Gene3D - 708 818 - -
Seca8g07775 819 MobiDBLite consensus disorder prediction 703 718 - -
Seca8g07775 819 MobiDBLite consensus disorder prediction 41 55 - -
Seca8g07775 819 MobiDBLite consensus disorder prediction 1 64 - -
Seca8g07775 819 SUPERFAMILY Ubiquitin-like 711 817 IPR029071 -
Seca8g07775 819 Pfam Ubiquitin family 747 814 IPR000626 GO:0005515
Seca8g07775 819 CDD Ubl_SF3a120 732 812 IPR035563 -
Seca8g07775 819 SMART ubq_7 740 812 IPR000626 GO:0005515
Seca8g07775 819 MobiDBLite consensus disorder prediction 680 702 - -
Seca8g07775 819 MobiDBLite consensus disorder prediction 536 551 - -
Seca8g07775 819 ProSiteProfiles SURP motif repeat profile. 202 244 IPR000061 GO:0003723|GO:0006396
Seca8g07775 819 SUPERFAMILY Surp module (SWAP domain) 177 252 IPR035967 GO:0003723|GO:0006396
Seca8g07775 819 MobiDBLite consensus disorder prediction 553 572 - -
Seca8g07775 819 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 52 769 IPR045146 GO:0003723|GO:0045292
Seca8g07775 819 Coils Coil 286 306 - -
Seca8g07775 819 MobiDBLite consensus disorder prediction 536 572 - -
Seca8g07775 819 FunFam Splicing factor 3a, subunit 1 195 253 - -
Seca8g07775 819 FunFam Probable splicing factor 3A subunit 1 708 818 - -
Seca8g07775 819 ProSiteProfiles Ubiquitin domain profile. 760 816 IPR000626 GO:0005515
Seca8g07775 819 MobiDBLite consensus disorder prediction 680 720 - -
Seca8g07775 819 MobiDBLite consensus disorder prediction 126 143 - -
Seca8g07775 819 MobiDBLite consensus disorder prediction 126 156 - -
Seca8g07775 819 SUPERFAMILY Surp module (SWAP domain) 49 124 IPR035967 GO:0003723|GO:0006396
Seca8g07775 819 FunFam Splicing factor 3A subunit 1 58 129 - -
Seca8g07775 819 Pfam Pre-mRNA splicing factor PRP21 like protein 269 483 IPR022030 -
Seca8g07775 819 SMART surpneu2 72 125 IPR000061 GO:0003723|GO:0006396
Seca8g07775 819 SMART surpneu2 200 253 IPR000061 GO:0003723|GO:0006396
Seca8g07775 819 Coils Coil 364 384 - -
Seca8g07775 819 Gene3D Surp module 195 253 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07775 Seca-Chr8 175025279 175030413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07775 747 816 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 4.45e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07775 K12825 - gmx:100790309 1231.85