Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07765 ATGGATCCAGTATCTGCTGATGTGTCTAATTCACCACCTGTTAAAGTTCCATCTACTGCACCTCCTGCTAAAGAGGCTGATGGACAAGCTTCAGCTGCTGTTGCCTCTGGACAAGATAATTCTGCCCCTGAGGCACCATCTAGGCTAAATCCCACTGGCATATCATCTTGGGCCAAAAATTTGAAAATTTCTCAATCATTTTCTGGCTCCCAAGATGACTCATCAAGTGGAAATGTTGGGAAATCAGCTTTTGCACGCCTCACTAGTAATTTGGGATTGCGGTTGTCTCCAAAATCTCCTGTGGCAGATGACAGTTCCAATGAAACAACAGCACAATCTAATTTGTTTGGAAGTATTACAAAAGGCCTGGTTGACTCTTCTAAGAATGCTGTAAAAGCTGTACAGGTTAAAGCACGGCATGTTGTTTCTCAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACAGAAAACATTATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGCTTTTTTGGTTATGTTGAAGGATTTTACCGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAGACTCACCATAAGGGTAAATACAAAGTATATAATCTCTGTTCTGAGAGGCTGTATGATGCATCATTGTTTGAGGGGAAGGTTGCTAGCTTCCCATTTGATGACCATAATTGCCCACCAATTCAACTGATTACATCATTTTGTCAAAGTGCATACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTTCACTGTAAGGCTGGAATGGCGAGGACAGGGTTGATGATTTCTAGCCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCAATGGATTACTATAATCAGAAAAGATGTATTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGGTGTTGACATACTTTAATGGCGAAATCCCACCTGCCCGCAGGTGCATGCTTAGGGGATTCAGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCTATAACTGTCTCTGATCATAGAGGTGTGCTGTTCTTGGACTAA 1101 0.4133 MDPVSADVSNSPPVKVPSTAPPAKEADGQASAAVASGQDNSAPEAPSRLNPTGISSWAKNLKISQSFSGSQDDSSSGNVGKSAFARLTSNLGLRLSPKSPVADDSSNETTAQSNLFGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLITSFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGEIPPARRCMLRGFRLHRCPYWIRPSITVSDHRGVLFLD. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07765 366 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Seca8g07765 366 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 363 - -
Seca8g07765 366 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Seca8g07765 366 MobiDBLite consensus disorder prediction 1 53 - -
Seca8g07765 366 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Seca8g07765 366 MobiDBLite consensus disorder prediction 33 53 - -
Seca8g07765 366 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 300 IPR000387 GO:0016311|GO:0016791
Seca8g07765 366 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Seca8g07765 366 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Seca8g07765 366 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07765 Seca-Chr8 174908508 174914869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07765 19 364 Protein tyrosine phosphatase (PTP) family AT3G19420 77.077 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07765 K01110 - gmx:100784003 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07765 8 174908508 174914869 Seca8g07765 8 174908508 174914869 ECH
Seca10g00718 10 6718535 6721229 Seca8g07765 8 174908508 174914869 PCT