Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07728 ATGGCATGGCGATCTGGATCTCTGTCTCGCTCCTTCATGTCTTCAACTAGGGCTTCACTCCGCCCTTCAACCCCTTCGCCCCTTCCCCGTATCCCTCCGCCGCCAACTGCCGCCCCTCGCATCCAGTTCCGCCGCTTTTCCAGGCCTATTTCCAGGAATTTGGGGCCATTGGGTTGCACACAATCACTCTTACCTCTGCATGGTACAATGGCCATAATCTGCATGACGTCACACCTTTCTGTCAGTGAGCGGGCTTGTTGCGAGCTGTCCCATGAAGGTATTATTAAGATTCGAATTTATAGGGAGGAATGGAAAAGATGGGTGATGCGCAAGGACATCAATCATCCAATGGCAAGAGAAGAATGCTGCATAGTGATCCTGATTCCTGAGGTGAGGAACGTGAAGAAGCTGTTGGATTTGCATAGCTGCCTTCAAGATTATGGAGGAACAATAATTTGTTATGCAATGCATGACCAAACACTTTCTATCTCCAAATTAGACTCCACAAAGCTGAGCTATGATTGGTTGGATTCCAACAAGCCTTTTCTCATCTATTCAACTTCCCTTGATCAACATCTGAGAACTTGGGGGAAAATGATGATCAAGGAAGATGAAGCAACTCTTACAACAGCCAAGGAACAAGCAGGTGAAGTGATGAACAGAGACAAGAACAATGAGGGAAGCGAAGAAGACAATCCAGAAGAGTGGTTGAACCTCAGCTTAGGAGGCACTTCACTCTCAACAGCAGGAGACTCTGATTCACAATCAAGACCAGCTACTGCCAAAGTTTTTTCATGCAACTTTTGCATGAGGAAGTTCTTTAGTTCACAAGCATTAGGAGGTCATCAGAACGCTCACAAAAGGGAAAGAGGTGCAGCCAGAAGATATCAATCTCAGAGGACGATGGCACTAATGGGCTTGTCCATGAACAATCCTATGCTTCGATCACTTGGTGTCCAGCCTCATTCACTCGTGCACAAGCCATGCAGAGGTGGAACTATGATGGCACCGAGCTTTCATGAAGCATATGTAGCAGGACTTGGAACGGCATGGACAACCTTAGCCTCAGAGGATCAAACGGATCTGGTGTGGCCAGGCAGCTTTCGTTTGGTTCCACAACAGCCCGAGCCACCACCTCAGCAGTCACTCAAGCTTGATTTAGACCTCAGACTCTGA 1176 0.477 MAWRSGSLSRSFMSSTRASLRPSTPSPLPRIPPPPTAAPRIQFRRFSRPISRNLGPLGCTQSLLPLHGTMAIICMTSHLSVSERACCELSHEGIIKIRIYREEWKRWVMRKDINHPMAREECCIVILIPEVRNVKKLLDLHSCLQDYGGTIICYAMHDQTLSISKLDSTKLSYDWLDSNKPFLIYSTSLDQHLRTWGKMMIKEDEATLTTAKEQAGEVMNRDKNNEGSEEDNPEEWLNLSLGGTSLSTAGDSDSQSRPATAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRTMALMGLSMNNPMLRSLGVQPHSLVHKPCRGGTMMAPSFHEAYVAGLGTAWTTLASEDQTDLVWPGSFRLVPQQPEPPPQQSLKLDLDLRL. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07728 391 ProSitePatterns Zinc finger C2H2 type domain signature. 266 286 IPR013087 -
Seca8g07728 391 SUPERFAMILY beta-beta-alpha zinc fingers 261 290 IPR036236 -
Seca8g07728 391 MobiDBLite consensus disorder prediction 213 240 - -
Seca8g07728 391 MobiDBLite consensus disorder prediction 25 39 - -
Seca8g07728 391 MobiDBLite consensus disorder prediction 213 230 - -
Seca8g07728 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 291 IPR013087 -
Seca8g07728 391 MobiDBLite consensus disorder prediction 1 39 - -
Seca8g07728 391 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g07728 391 PANTHER ZINC FINGER PROTEIN 4-LIKE 200 391 - -
Seca8g07728 391 Gene3D Classic Zinc Finger 248 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07728 Seca-Chr8 174544074 174552464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07728 200 378 C2H2 Transcription Factor Family AT1G24625 36.066 6.86e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07728 - - gmx:100811125 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07728 8 174544074 174552464 Seca8g07728 8 174544074 174552464 ECH