Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07716 ATGCTGCGTTTGTGCTTCACTCCTCTCGATTGTTGCTTCCGACGCCGTGGTGGTGCTGACGGACTTCTCTGGCACACCGACTTGAAACCTCACGCCTCCGGCGACTTCTCCATCGCCGTCGCTCAAGCCAATTACAGTCTCGAAGATCAGAGCCAAGTCTTCACCTCCCCTTCCGCTACTTACGTCGGCGTCTACGACGGCCACGGCGGACCTGAAGCTTCTAGATTCGTCAACAAACATCTCTTCCCTTATTTGCACAAATTTGCCACTGAGCAAGGGGGATTGTCTGTGGATGTGATAAAAAAGGCTTTTAGTGCCACGGAGGAGGAGTTTCTGCATTTGGTGAGGCTATCCTTGCCCATTAGTCCCCAGATTGCTTCCGTGGGATCGTGTTGTCTTCTTGGTGCAATTTCAAATAATGTGTTGTATGTTGCCAACCTTGGAGACTCCAGAGCTGTTCTTGGCAGGAGGGCTATGGAGAGCAAGAATTGTCCTGTGGTGGCGGTGCGCTTGTCAACGGATCATAATGTAGCTGATGAGGAGGTGAGGAGAGAAGTTGAAGCTCTCCACCCTGATGATTCGCACATTGTGGTTTATAGCCGTGGAGTTTGGAGGATTAAGGGCATCATACAGGTGTCAAGATCTATTGGTGATGTGTATTTGAAGAGACCTGATTTCTACAGAGACCCTGTTTTTCAGCGATTTGGAAATCCTGTTCCTTTGAAGCGCCCTGTAATGACAGCTGAACCATCAGTCATTATTAGGGAGCTTGAATCAGAAGATTTATTCTTGATATTTGCATCAGATGGCCTTTGGGAACAATTAAGTGATGAAGCCGCAGTTGAGATTGTATTCAAATATCCGAGAGCTGTGAGTGACTTCTGCTACTTGTGA 894 0.481 MLRLCFTPLDCCFRRRGGADGLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVRLSLPISPQIASVGSCCLLGAISNNVLYVANLGDSRAVLGRRAMESKNCPVVAVRLSTDHNVADEEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPVFQRFGNPVPLKRPVMTAEPSVIIRELESEDLFLIFASDGLWEQLSDEAAVEIVFKYPRAVSDFCYL. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07716 297 SMART PP2C_4 29 297 IPR001932 -
Seca8g07716 297 CDD PP2Cc 48 292 IPR001932 -
Seca8g07716 297 Gene3D - 26 293 IPR036457 -
Seca8g07716 297 FunFam Probable protein phosphatase 2C 42 26 293 - -
Seca8g07716 297 ProSiteProfiles PPM-type phosphatase domain profile. 35 297 IPR001932 -
Seca8g07716 297 Pfam Protein phosphatase 2C 56 284 IPR001932 -
Seca8g07716 297 SUPERFAMILY PP2C-like 44 287 IPR036457 -
Seca8g07716 297 PANTHER PROTEIN PHOSPHATASE 34 289 IPR015655 GO:0004722|GO:0006470
Seca8g07716 297 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07716 Seca-Chr8 174431272 174434461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07716 17 289 PP2C-type Phosphatase Gene Family AT3G51370 55.516 1.14e-112 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07716 - K01102 gmx:100813810 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07716 8 174431272 174434461 Seca8g07716 8 174431272 174434461 ECH
Seca10g00689 10 6388551 6392770 Seca8g07716 8 174431272 174434461 PCT