Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07715 ATGACGAGCGCTTCAGAGCTATTCCACATCAGGAGGCACCGACTAGGACGAAATGCTCTCGATCTAGGGTTCGACTCCTCTCCTTCTCCTGACCATCGTTTTCACGACTCCGACGGTGATGATTCTCTCCGTATCCGCCGCCACTACCACCTGCGTCGCCTCCGTCAACCGGAGCGTGCATCTGATAGAAATGATAGGAGATATCGCCGGTCTCTCTTTAATGATTCTGCAGAGAATAATGTTAGAGGCACTCTTAGAGCGAGTGCCAGTGACAGACTACCCGTAGGTGTGCTACTTGCCAGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAACCTCTCGCTAGAAACAGGCAATATGGTAGAGATTCTACGGATGAGGATCAAGAAAGTGAACTGTCAAGTGAAGTTCCAACTGGGGGCTTTTTAGTTGCTGACTTGACTTCTCAAATGGGAAGGTCCCAGCTCTTGCAAGAACTAAACAAAAAGCCACCTGGACTCACCCAGGAGGCCTTGGACTGTTTGCATCTGGAAGTTTTTAGCAGCGGGGAGACAAGATTAGAATCCAGGGTACTGCAGGATTGTGGCATATGCTTGGAATCTTTCACAGATGGAGATGAGCTGATACGTTTGCCATGCGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCTGTTGTGGAGACTGTCCATACTGTAGAAGATGTATAGTTGTAAATATTCACTCTCCAAAAAATGAGGCTGAGCAGTCTTTACATTGA 765 0.481 MTSASELFHIRRHRLGRNALDLGFDSSPSPDHRFHDSDGDDSLRIRRHYHLRRLRQPERASDRNDRRYRRSLFNDSAENNVRGTLRASASDRLPVGVLLARARLLQRLRGEPLARNRQYGRDSTDEDQESELSSEVPTGGFLVADLTSQMGRSQLLQELNKKPPGLTQEALDCLHLEVFSSGETRLESRVLQDCGICLESFTDGDELIRLPCGHKFHSACLDPWIRCCGDCPYCRRCIVVNIHSPKNEAEQSLH. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07715 254 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Seca8g07715 254 PANTHER SI:CH211-59O9.10 21 240 - -
Seca8g07715 254 Pfam Ring finger domain 193 235 IPR001841 -
Seca8g07715 254 MobiDBLite consensus disorder prediction 115 134 - -
Seca8g07715 254 SUPERFAMILY RING/U-box 193 241 - -
Seca8g07715 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 239 IPR013083 -
Seca8g07715 254 SMART ring_2 194 234 IPR001841 -
Seca8g07715 254 CDD RING-H2_PA-TM-RING 193 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07715 Seca-Chr8 174422928 174425348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07715 1 239 C3H Transcription Factor Family AT1G49850 42.636 1.58e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07715 - - gmx:548042 323.168