Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07712 ATGGCTGATGCATTACATGAAGAGCAACGCAGGAGTGGTGCTCTTGCTGTTTCTCCTAAGAGGGACATTGCCTTGTTTGAAGGGGACAGGGATTTTGAGCCACACAATGGCATTGAATTTGAATCTCATGAAGCAGCTTACTCCTTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACACCTGAGTCTGACAGTGGGAACAGTCGTAGACCAAGTGTAAAGAAGACGGATTGTAAAGCTTGCATGCATGTAAAGAGAAGGCCAGATGGAAAATGGATCATTCATGAATTTATAAAGGAGCACAACCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCACAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGCACTAGAAAGATGTATGTTGAAATGTCCAGGCAATCTGGTGGCTGTCAAAACATTGGGTCTCTCTTGGGTGATACAAATTATCAGTTTGACAGAGGGCAGTATTTGGCTTTGGATGAGGGAGATGCCCAAGTTATGCTTGAGTATTTCAAGCACATTCAAAAAGAGAACCCCAACTTCTTTTATGCTATAGATTTAAATGAAGAACAGCGTTTAAGAAATCTATTTTGGATTGATGCAAAAAGTATCAATGATTATCTCAGCTTTAACGATGCAGTTTCATTTGATACCACCTACATAAAAAGCAATGATAAGTTGCCATTTGCTCCTTTTGTTGGAGTGAACCATCACTCTCAACCCATATTGCTTGGATGTGCATTAGTTGCAGATTGGACTAAACCAACATTTGTTTGGGTATTGAAGACATGGCTTAGAGCAATGGGTGGGCAAGCTCCTAAAGCTATAATTACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAATGTACGACATTGCTTTTCTCTTTGGCACATACTGGAAAGGATACCTGAAAATCTGTCTTTTGTGATCAAGCAGTATAAGAACTTCTTGCCAAAGTTTAACAAATGCATTTTTAAGTCATGGACAGATGAACAGTTTGACATGAGATGGTGGAAAATGGTCACTAGATTTGAGCTCCATAATGATGTATGGTTTCAGTCATTGTATGAAGACCGGAAAAAGTGGGTGCCAACTTACATGGGGGACACTTTTTTAGCTGGAATGTCTACACCTCAACGTTCTGAAAGTATGACCTCTTTCTTTGACAAATATATTCATAAGAAAATCACCCTTAAAGAGTTTGTTAAACAATATGGGATGATTCTTCAGAATAGGTATGATGAGGAAGCCATTGCAGATTTTGATACATTGCACAAACAACCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTTTACACACATGCAATATTTAAGAAATTCCAAGTCGAAGTGTTGGGTGTAGCTGGTTGTCAATCCAGGATAGAGGTTGGAGATGGAACTATTGCAAAATTTATAGTTCAAGATTATGAGAGGGGTGAGGAATTTTTGGTAACTTGGAATGAGTTGAGCTCAGAGGTCTCTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAGTGTTCTCCAACGTTGTGGTTGTTCAAGCGTTCCTTCTCATTATATCATGAAGCGGTGGACCAAAGATGCCAAAATTAGGGAACCCATGGCAGATAGGACAAGAAGGATACAAACTAGGGTGCAACGGTATAATGACTTGTGTAAACGAGCTATTGAGTTGAGTGAAGAAGGATCATTATCTGAAGAGAGTTACAATGTTGCTATTCGTGCACTTGTTGATGCCCTGAAGAACTGTGTACTTGTGAATAATTCTAACAACAATGGTGCAGATACTAGCAACAATGCTTATAGCCTTCGTGAAGCAGAAGAGAATCAGGGTAACCTTGCTCTGAAACCAAGCAAGAAGAGGAGCACAGCTAGGAAAAGAAAGGTGCAACTAGAACAGGATGTTATGCTTGTTGATGCTCAAGAGAGCCTGCAACCAATGGATAATCTAAGCTCGGATGCAATGACACTTAATGGATATTATGGAACCCAGCCGAATGTGCAAGGACTGCACGTACAGTTGAACTTAATGGAGCCACCTCATGATGGTTACTATGTTAATCAACAGAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCAAGCCATGATGGGTTTTTCGGAACACAGCAAAGCATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCAGCAACTACTTTTGGGTATAGCCTTCAGGTTTGTGTGCAAATTGTGCCATATACTAGCACTTGA 2418 0.3991 MADALHEEQRRSGALAVSPKRDIALFEGDRDFEPHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGNSRRPSVKKTDCKACMHVKRRPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSLLGDTNYQFDRGQYLALDEGDAQVMLEYFKHIQKENPNFFYAIDLNEEQRLRNLFWIDAKSINDYLSFNDAVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADWTKPTFVWVLKTWLRAMGGQAPKAIITDQDKALKEAIEEVFPNVRHCFSLWHILERIPENLSFVIKQYKNFLPKFNKCIFKSWTDEQFDMRWWKMVTRFELHNDVWFQSLYEDRKKWVPTYMGDTFLAGMSTPQRSESMTSFFDKYIHKKITLKEFVKQYGMILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEVGDGTIAKFIVQDYERGEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIREPMADRTRRIQTRVQRYNDLCKRAIELSEEGSLSEESYNVAIRALVDALKNCVLVNNSNNNGADTSNNAYSLREAEENQGNLALKPSKKRSTARKRKVQLEQDVMLVDAQESLQPMDNLSSDAMTLNGYYGTQPNVQGLHVQLNLMEPPHDGYYVNQQSMQGLGPLNSMAPSHDGFFGTQQSIHGLGGQLEFRPATTFGYSLQVCVQIVPYTST. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07712 805 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Seca8g07712 805 Pfam SWIM zinc finger 537 570 IPR007527 GO:0008270
Seca8g07712 805 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Seca8g07712 805 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 644 IPR031052 GO:0006355
Seca8g07712 805 SMART 26again6 546 573 IPR006564 GO:0008270
Seca8g07712 805 Pfam MULE transposase domain 256 348 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07712 Seca-Chr8 174395736 174399049 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g07712 MULE 1.9e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07712 - - gmx:100805377 1461.05