Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07702 ATGGCTTTAGAGGCTCTGAATTCTCCTACAGCACCCACCACCAATCCCTTCCCTGCTCCTAATTACGCAGAAGAAGAAGAGGAAGAGGTTGATCTTCACTTCCGTGAGCCTTGGGCCAAGAGGAAACGCTCGAAACGACCCCGTATCGAGAATTCACCCACTGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCAAAGCGGAAACAAAAACAAAAAAACCTCTCAATCATCATCTTCTCAACGAGAAGCGTCACCGTCACCGCCTATGAAGCTGACTCACAGGTGCACGGTTTGCAACAAAGCCTTTCCCTCTTATCAAGCACTCGGTGGCCACAAGGCAAGTCACCGAAAATCCTCATCTGAAGCTCCCACCGCCACCGCCACCGCCACCGCCGTCAACGACAACGTCTCCACCTCTACCGTCACCGGCGGAAGAGTGCACGAGTGTTCCATCTGTCACAAGACTTTCCCTACAGGTCAAGCACTTGGTGGCCACAAACGGTGCCACTACGAAGGAGGCAGCAACAACAACAACAGTCACAGTCACAGTTACAGTAACGTTAACGCCAACAACAGCAGTGCCGTTACGACCTCTGAGGGCGGCGCTTCCGCACACAGCCTCCGTGGTTTTGACCTGAACCTGCCTGCTCCTCTGACCGAGTTCTGGCCGCCGGTGGGATTCGAATCGAAGAAGAACAAGGTCAACATAGCCGGAAGCGGTGAACAAGAGGTGGAAAGCCCTCTGCCAGTAACCGTCAAGAGGCCGCGTTTGTTTCCCGGTGAAGATGATGATTGA 804 0.5361 MALEALNSPTAPTTNPFPAPNYAEEEEEEVDLHFREPWAKRKRSKRPRIENSPTEEEYLALCLIMLAQSGNKNKKTSQSSSSQREASPSPPMKLTHRCTVCNKAFPSYQALGGHKASHRKSSSEAPTATATATAVNDNVSTSTVTGGRVHECSICHKTFPTGQALGGHKRCHYEGGSNNNNSHSHSYSNVNANNSSAVTTSEGGASAHSLRGFDLNLPAPLTEFWPPVGFESKKNKVNIAGSGEQEVESPLPVTVKRPRLFPGEDDD. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07702 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Seca8g07702 267 Gene3D Classic Zinc Finger 94 172 - -
Seca8g07702 267 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Seca8g07702 267 MobiDBLite consensus disorder prediction 1 52 - -
Seca8g07702 267 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 42 219 IPR044653 GO:0003700
Seca8g07702 267 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Seca8g07702 267 Pfam C2H2-type zinc finger 96 120 - -
Seca8g07702 267 Pfam C2H2-type zinc finger 149 173 - -
Seca8g07702 267 MobiDBLite consensus disorder prediction 70 89 - -
Seca8g07702 267 SUPERFAMILY beta-beta-alpha zinc fingers 96 172 IPR036236 -
Seca8g07702 267 MobiDBLite consensus disorder prediction 239 267 - -
Seca8g07702 267 SMART c2h2final6 96 118 IPR013087 -
Seca8g07702 267 SMART c2h2final6 150 172 IPR013087 -
Seca8g07702 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 172 IPR013087 -
Seca8g07702 267 MobiDBLite consensus disorder prediction 70 95 - -
Seca8g07702 267 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07702 Seca-Chr8 174306476 174307279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07702 1 262 C2H2 Transcription Factor Family AT1G27730 43.223 2.26e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g07702 zf-C2H2_6 7.8e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07702 - - gmx:100819484 314.694