Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07700 ATGGCATCTCTGCAGCCGGCAACGGCGGCGCCCGGGCGAGAGCTCGCTAACCCTCCGTCGGACGGCATCTCGAATCTCCGCTTCTCCAATCACAGCGATCATCTACTCGTCTCTTCATGGGATAAGAGCGTGCGGTTGTATGACGCCAGCGCAAATGTGCTGAGAGGAGAGTTCATGCACTCTGGTCCCGTCCTCGATTGCTGCTTCCACGACGATTCTTCCGGCTTCAGCGTCGGCGCCGACAATACAGTTAGGCGCCTCGTTTTCAGTTCTAATAAAGAGGATATTTTGGGAAGGCATGATGCACCTGTTCGTTGTGTTGAGTACTCCTATGCCGCGGGGCAATTGATCACCGGTAGTTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAAGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCGTGTTTACTCTCTCTCTCTTGTTGGACATCGTCTAGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGATTTGAGGAACATGTCTCAACCTGAGCAACGAAGAGAATCTTCTTTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGCTATGCACTTAGTTCTGTTGAAGGGCGAGTTGCAATGGAATTCTTTGACCTCTCTGAGTCTAGTCAAGCAAAAAAGTATGCTTTTAAGTGTCACAGAAAAACAGAAGCCGGAAGGGACATTGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGTACGTTTGCCACTGGAGGTTGTGATGGGTATGTTAACGTATGGGATGGAAACAACAAGAAGAGGCTGTACCAGTACTCAAAATATCCTACTAGCATTGCTGCACTTTCGTTTAGCAGAGATGGACGCCTCCTGGCTGTCGCATCTAGTTACACATTCGAAGAGGGGCCTAAACCCCATGAACAAGATGCTATCTTCGTTCGTAGTGTAAACGAGATTGAGGTCAAGCCAAAACCCAAAGTCTATCCCAATCCTCCTGCGTGA 1032 0.4855 MASLQPATAAPGRELANPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHSGPVLDCCFHDDSSGFSVGADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSESSQAKKYAFKCHRKTEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKPHEQDAIFVRSVNEIEVKPKPKVYPNPPA. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07700 343 FunFam Mitotic checkpoint protein bub3, putative 8 336 - -
Seca8g07700 343 SUPERFAMILY WD40 repeat-like 19 306 IPR036322 GO:0005515
Seca8g07700 343 PANTHER MRNA EXPORT FACTOR AND BUB3 14 329 - -
Seca8g07700 343 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g07700 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Seca8g07700 343 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Seca8g07700 343 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Seca8g07700 343 PRINTS G protein beta WD-40 repeat signature 35 49 IPR020472 -
Seca8g07700 343 Gene3D - 10 337 IPR015943 GO:0005515
Seca8g07700 343 Pfam WD domain, G-beta repeat 97 129 IPR001680 GO:0005515
Seca8g07700 343 Pfam WD domain, G-beta repeat 22 48 IPR001680 GO:0005515
Seca8g07700 343 Pfam WD domain, G-beta repeat 231 272 IPR001680 GO:0005515
Seca8g07700 343 SMART WD40_4 8 48 IPR001680 GO:0005515
Seca8g07700 343 SMART WD40_4 90 129 IPR001680 GO:0005515
Seca8g07700 343 SMART WD40_4 137 173 IPR001680 GO:0005515
Seca8g07700 343 SMART WD40_4 224 272 IPR001680 GO:0005515
Seca8g07700 343 SMART WD40_4 51 88 IPR001680 GO:0005515
Seca8g07700 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 281 IPR001680 GO:0005515
Seca8g07700 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 129 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07700 Seca-Chr8 174282752 174286652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07700 97 305 U-box Gene Family AT2G33340 24.413 1.46e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07700 K02180 - gmx:100808389 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07700 8 174282752 174286652 Seca8g07700 8 174282752 174286652 ECH