Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07698 ATGGAACCTACTCAGTTGATTTCTGAAGAATGGGGTTCTCTTAGTGGATTGTACACAGCTGAGGAAGCTGATTTCATGGCTCAGTTGCTTGGTGGAAATACCAGTTTTGGCATGCCATCTGCATTTAGGCCTGGCCATGAATCAACAATAATGACCTTGACAAGCACCAATAGCTATTCATATTTTCCTTCAAATGGTGCAAATACTAATTTCCTCTGTTTCTCCCAAGGGAGTAGCCCCAGCACTGATAGTGGTAACATCTTTTCCACCAGCACAAGTAGTGGAACTTGCTCCTTTGATCCAGCAACAAACATTGACTCTGTGTCCATGGTTTTTTGCTTGGGAGATTCCAAATCTAGTCTTCAATGGAATGACAACATAAGCCGACAGATGAATGAAAGCACTGATGAAGAGTCAGGTCTAGACCTAGAGAAGCTGGTTTTTGCTGACAACAATTGGCAGGCTAAGAGGGAGTATGAAATGATGAATTTTGAACCTTCAGAAGAGGATAGAAGCAGAAACCTGGAGAACCCAGCAAAAAGATTTAGGAGCTCAATAGAGGTCTCAAAAAACATGAGGAATGCTAGGAAAAATCCAAAATCTGCTTCTATGAGTAAGAATGAAGAGGGTAGAAGCACATGCCTCCAAATGCAGGGCTCAAGCAGCTGCTTTTCACATGTTGACTGTAATGCTTATGTGGAGCTAAATGGAGGGGCAACTTCAAGTCTGAGCCCAAAAGATCCTGCAGCTCCTAATTTATATAGAAAATCAAGAGCAACCAGTGGTCCTGCCACTGATGCACAGAGCATATATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAAAATACTGCAAAACCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTTAGCTCGGATGATCTGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGACCTCAGTACTTCCCCAACTAAAGGAAGATGA 1050 0.419 MEPTQLISEEWGSLSGLYTAEEADFMAQLLGGNTSFGMPSAFRPGHESTIMTLTSTNSYSYFPSNGANTNFLCFSQGSSPSTDSGNIFSTSTSSGTCSFDPATNIDSVSMVFCLGDSKSSLQWNDNISRQMNESTDEESGLDLEKLVFADNNWQAKREYEMMNFEPSEEDRSRNLENPAKRFRSSIEVSKNMRNARKNPKSASMSKNEEGRSTCLQMQGSSSCFSHVDCNAYVELNGGATSSLSPKDPAAPNLYRKSRATSGPATDAQSIYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSTSPTKGR. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07698 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 328 IPR036638 GO:0046983
Seca8g07698 349 MobiDBLite consensus disorder prediction 192 211 - -
Seca8g07698 349 Gene3D - 266 321 IPR036638 GO:0046983
Seca8g07698 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 312 IPR011598 GO:0046983
Seca8g07698 349 CDD bHLH_AtIND_like 264 326 - -
Seca8g07698 349 FunFam Basic helix-loop-helix transcription factor 264 321 - -
Seca8g07698 349 MobiDBLite consensus disorder prediction 240 268 - -
Seca8g07698 349 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 335 - -
Seca8g07698 349 SMART finulus 269 318 IPR011598 GO:0046983
Seca8g07698 349 Pfam Helix-loop-helix DNA-binding domain 273 313 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07698 Seca-Chr8 174249547 174251299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07698 10 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.178 5.59e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g07698 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07698 - - gmx:100816788 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00048 10 423148 424702 Seca8g07698 8 174249547 174251299 PCT