Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07697 ATGGATCCTGTTGAGCAAACTTCTGAAGAATGGAGTTCTCTTAGTGGATTGTACACAGCTGAAGAAGCTGATTTTATGAGGCAGTTGCTTGGTAACTGCTCAGTCCCTGAGCAAGTCTATGAAAATTACAATTTGGAAATTCCATCTGCATTATGGCCTGGCCATGAATCCACAATAGTGACTGTCACAGGCATCAATAGCACTTCACATTTTTCTGCAGATACTGATAATAGTCATTCTAATTTTTTTGCCTTTCTACAAGGAAGTAGTACCTCCATTGCTGATAGTAGAAATGTATTTCCTACTACAAGTGATGGTAACTGCTGCTTGAATGATACAGTAGCCAATATTGGCTACATGTCCATGAGTGATGATGCCAAATTCAACCCATGTAGTGTTCAAGGGAATGACAGCCAACAGATAAATGAAAACATGGATGAAGAGTTAGCTCTGCAGGCTCACAAGGAATGTGAAGAAATGGTTTCTGAACCAGCTGAAGAGGATATAACCAGCAACCTGGAAAAGTCAGGAAAAAGATCTAGGACCTCAATGGAGGTGAGAAAGAACAAAGCAAATGTTAAAGCTAGGAAGAAACCAAAATCTTCTTCCATAAGCAACACTGAAGAGGATAGAAGTGCTGGTCTTCAGGGGCAGAGCTTGAGTAGTTGCTGCTCAGAGGATGATGACTCTAATGCTTCTCAGGAGCTAAATGGAGGAGGGTCTTCAAGCTTGAGCCTGAAGGATTCTGTAGCTCTGAAATTAAAGGGAAAATCAAGATCTAGTAGAGGTTCTGCTACTGATCCACAGAGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTGGTCCCCAATGGAACCAAGGTGGATATAAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAATAA 1047 0.4078 MDPVEQTSEEWSSLSGLYTAEEADFMRQLLGNCSVPEQVYENYNLEIPSALWPGHESTIVTVTGINSTSHFSADTDNSHSNFFAFLQGSSTSIADSRNVFPTTSDGNCCLNDTVANIGYMSMSDDAKFNPCSVQGNDSQQINENMDEELALQAHKECEEMVSEPAEEDITSNLEKSGKRSRTSMEVRKNKANVKARKKPKSSSISNTEEDRSAGLQGQSLSSCCSEDDDSNASQELNGGGSSSLSLKDSVALKLKGKSRSSRGSATDPQSVYAKKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTK. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07697 348 Gene3D - 264 321 IPR036638 GO:0046983
Seca8g07697 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 329 IPR036638 GO:0046983
Seca8g07697 348 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 322 IPR045843 GO:0003700|GO:0006355
Seca8g07697 348 Pfam Helix-loop-helix DNA-binding domain 274 314 IPR011598 GO:0046983
Seca8g07697 348 SMART finulus 270 319 IPR011598 GO:0046983
Seca8g07697 348 CDD bHLH_AtIND_like 265 327 - -
Seca8g07697 348 FunFam Basic helix-loop-helix transcription factor 265 322 - -
Seca8g07697 348 MobiDBLite consensus disorder prediction 168 190 - -
Seca8g07697 348 MobiDBLite consensus disorder prediction 206 244 - -
Seca8g07697 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Seca8g07697 348 MobiDBLite consensus disorder prediction 162 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07697 Seca-Chr8 174245038 174246850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07697 10 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 41.304 2.67e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g07697 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07697 - - gmx:100817334 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07697 8 174245038 174246850 Seca8g07697 8 174245038 174246850 ECH