Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07678 ATGGCCAGTTTTGGAGGAACCACACAAAAATGCATGGCATGTGACAAAACAGTGTACCTGGTTGATAAGCTTACCGCAGATGGCCGTATTTTTCATAAGGCCTGCTTCAGATGCCACCATTGCCGCAATACCCTTAAGCTAAGCAACTATTGTTCTTTTGAGGGGGTTCTCTATTGCAGACCTCACTATGATCAACTCTACAAGAGAACTGGCAGCCTGGACAAAAGCTTCGAAGGAACGCCCAAAATTCAGAAGCCAGAGAGACAGATCACAGATAATGAGTATGTTACAAATTTACAATATTTGAACCTGTTTGAACAATATTTCCCCTGTTTGCTGTTTAGTAAGTACCAAGGTAATGGCAAACGTGTTCTTGGGCACCAGAGATAA 390 0.4256 MASFGGTTQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPERQITDNEYVTNLQYLNLFEQYFPCLLFSKYQGNGKRVLGHQR. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07678 129 Gene3D Cysteine Rich Protein 6 75 - -
Seca8g07678 129 CDD LIM1_SF3 7 69 - -
Seca8g07678 129 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Seca8g07678 129 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Seca8g07678 129 SMART lim_4 10 62 IPR001781 -
Seca8g07678 129 FunFam LIM domain and actin-binding 1 5 75 - -
Seca8g07678 129 Coils Coil 127 129 - -
Seca8g07678 129 Pfam LIM domain 11 65 IPR001781 -
Seca8g07678 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Seca8g07678 129 PANTHER OS06G0237300 PROTEIN 2 89 - -
Seca8g07678 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07678 Seca-Chr8 174098707 174100286 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g07678 LIM 9.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07678 K09377 - qsu:112034665 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07678 8 174098707 174100286 Seca8g07678 8 174098707 174100286 ECH