Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07653 ATGGCGAACCCAACTAAGAAGAGCAGGGGTAGGCAAAAGATTGAGATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGCAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCTTATGTGGTGCTGATGTTGCTCTCATTGTGTTCTCACCCGGTGAGAAGGTCTTCTCCTTTGGCCACCCCAACGTTGATGCAGTTATCGATCGCTATCTGAGGCGGGTCCCACCGCAAAACTCGGGTACCATGCAGTTCATTGAGGCTCATCGCAGTGCCAACGTGCGTGAGATGAATGCGCAACTGACTCAGATCAATAACCAACTTGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGCGAAAAGCAGCACAGGCTAAGTTCTGGTGGGCTTATCCCATTGAGGAGATGAATAGGGTTCAACTTGAACAATTCAAGTTGGCCTTAGAGGAACTTAAGAAACATGTTACTCGCTATTGTGATAGGCTCCTCATTCAAGGTGCTGCTTCTGCTGCTGTTGCTGCTACCAACCCAACTCATCATCATCACTATTTTACTGTTGCACCACCCGGTGGCTCTTCTACCAACTTGCCTCTCCTTCAGCCACCTCCTCAACCTCAGGTGTTTCCACCGCAGTTCTTTCATAATCCTATGCTGCAGAATCATTTATTTGATCATGGGAGCTTAATGCGCCACCATGGATCTAACAACTTGAGGAAGAAAACCACAGGGCGCAAGAAGATTGAGATCAAGAAACTTGACAAAGATTCCAACAAGCAAGTCACCTTCTCAAAAAGACGAGCAGGATTATTCAAGAAAGCCAGTGAACTTTGTATTTTATGCAATGTTCATGCAGCCATAATTGTGTTTTCTCCTGCTGACAAACTGTTCTGCTTTGGCCAACCCAATCCTGAAACCATCCTCACCCGCTATCTCAATGGAAATGCAGATTTTGAGCCAACAAAGTCCACAGGAAAATCAGTCTCCTATGAAGAGCACAATAGGCAATATGAGGAGGCAATAAAAACATTGGAGACTGAAAAAAAGAATCTATCAGAAATTGAAAGTTTGGCTAAAGTTTGGGATAGAGGGAACTGGTGGAATGAGCCAATTGATGAGATGGGTATAGATCAGCTTGAGCAATTTATGATATCTATCAATGAGTTAAGGAGGAAGCTGGCTGGAAGAGCAGATGAACTATCAATGATGCTTGCCATGCTATAG 1245 0.4522 MANPTKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFGHPNVDAVIDRYLRRVPPQNSGTMQFIEAHRSANVREMNAQLTQINNQLESERKHGDELNRMRKAAQAKFWWAYPIEEMNRVQLEQFKLALEELKKHVTRYCDRLLIQGAASAAVAATNPTHHHHYFTVAPPGGSSTNLPLLQPPPQPQVFPPQFFHNPMLQNHLFDHGSLMRHHGSNNLRKKTTGRKKIEIKKLDKDSNKQVTFSKRRAGLFKKASELCILCNVHAAIIVFSPADKLFCFGQPNPETILTRYLNGNADFEPTKSTGKSVSYEEHNRQYEEAIKTLETEKKNLSEIESLAKVWDRGNWWNEPIDEMGIDQLEQFMISINELRRKLAGRADELSMMLAML. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07653 414 SUPERFAMILY SRF-like 251 320 IPR036879 GO:0003677|GO:0046983
Seca8g07653 414 Coils Coil 334 364 - -
Seca8g07653 414 Coils Coil 97 120 - -
Seca8g07653 414 PANTHER MADS BOX PROTEIN 11 165 - -
Seca8g07653 414 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Seca8g07653 414 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Seca8g07653 414 CDD MADS_MEF2_like 251 324 IPR033896 GO:0000977|GO:0045944
Seca8g07653 414 Gene3D - 89 181 - -
Seca8g07653 414 ProSiteProfiles MADS-box domain profile. 250 310 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 261 306 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 FunFam Agamous-like MADS-box protein AGL62 262 327 - -
Seca8g07653 414 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Seca8g07653 414 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Seca8g07653 414 Gene3D - 262 358 IPR036879 GO:0003677|GO:0046983
Seca8g07653 414 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca8g07653 414 SMART madsneu2 250 309 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07653 Seca-Chr8 173840919 173849472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07653 247 404 Type I MADS-box Gene Family AT5G60440 40.606 1.53e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca8g07653 SRF-TF 4.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07653 - - gmx:100780445 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07653 8 173840919 173849472 Seca8g07653 8 173840919 173849472 ECH