Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07642 ATGATTCCTTCACTTGAGCTGCTTTCCTTCCTTCCTCTCATCCTCTTTCTCATACTCAAATCTGAAGCCAACGACCAGCTAAGTTTCCTGTACCACGATTGTAACGAAATCCACGGAAATATTACCCGGGGCAGTAACTACGGAAACAACCGGGATGCAGTTTTTCAAAAGATCTATACTGATACAGAAATTGATTACGGCTTCTACAACTTCTCCTACGGCAAAGACTCTGACAAAGTTAACGCAATAGGGCTCTGTAGAGGAGATGTTAAACCAGATGTCTGCCGTAGTTGCCTGTACAAATCCGCGGTCCTTCTCTCAGAGCGGTGCTCAGCACAGAAAGAGGCAATTGGATACTATGACAATTGCACGTTACGCTATTCCAACGACTCAATATTTGGTATCATGGAAACTAAAACTTCCCAAGTTTACTGCCACCTAAATGCCTCCGCAGAAGTCGATGATCGCTTCAATCAAACCCTCCACAGCTTGCTAGATAGACTGAAAACCACCGCGGCAGACGGTGACTCCCGTCTGAAATTTGCTGAAGATAGTGCTCCAGTTCAATCAAGCAATTATAACAGTACTATATACGCTCTCCTTCAGTGCACGCCTGATTTGTCTAAGGAAGAATGTGCTCGGTGCTTGGAATCGTCTTTTGTGAACAACATGTTTTCAATACCCTGTGATGTAGAGGGAGGCATTCGGTACATAGGACCAAGTTGTTCGGTGAGATATGAGACCCACGCCTTTTTTGACCCCATACTCATTGATGCACCAGCCCCACAGCCTTCGCAAGCACTTTATCCACCCCCATCTCCCACCACCACATCTAGCCAAGGAAAGAGCAAGACATTTCGGACGGTCATTGCAGTAGTTATTCCAGTCGTTGCGGTTGCTGTATTCCTCATCGTTTTCCGCATTTATGTAGGAGCGAGAAAATCGAGGCACGACTATATGGATGGACAGGATGGTGAAGGTGAAGGTGAAGGTGAAGGTGATGATGACATTAAAGCTTCCGAGTTGTTGCAATTTGACTTTGCAACCATCAGATTTGCTACAAACAACTTCTCTGATGCAAATAAGCTTGGCCAAGGTGGATTTGGAAGTGTTTACAAGGGTAGGCTCTCGGATGGACAAGAAGTTGCTATTAAAAGGTTGTCTAACAATTCTGACCAAGGAGAAACAGAATTTAAGAACGAAGTGTTGCTAACGGGGAAGCTTCAGCACCGAAACTTAGTTAAGCTACTAGGTTTTTGTTTAGAAAGAAGAGAAAGGCTACTGATATATGAGTTTGTCTCCAACAAAAGTCTTGATTATTTCATATTTGATCCAATCAAGCGTGCAATTTTGGATTGGGAAGTACGCTCCAAAATTATAAGAGGCATTGCACGTGGTCTTCTTTATCTTCATGAAGATTCTCGACTACAAATTATTCACCGAGATTTAAAAACAAGTAACATTCTGTTAGATGCAGAGTTGAGCCCAAAAATATCAGATTTTGGCATGGCAAGATTGTTTGATGTCAATCAAACTCAAGGCAATACAATGACGATTGTAGGGACTTTTGGATATATGGCTCCTGAGTACATTAAACATGGACAATTCTCAATAAAGTCAGATGTGTTTAGTTTTGGCGTAATGATTCTAGAAATTGTGTGTGGCCGAAGAAACAGTAGTGAGATTCGTAACGGGGACAATGTAGAGGATCTACTAAGCTTTGTAAGTGTGATACCTCTTCTCTTTGTTTTAAAGTTTGGAAGTATATGGTTATGGATCACATGA 1785 0.4224 MIPSLELLSFLPLILFLILKSEANDQLSFLYHDCNEIHGNITRGSNYGNNRDAVFQKIYTDTEIDYGFYNFSYGKDSDKVNAIGLCRGDVKPDVCRSCLYKSAVLLSERCSAQKEAIGYYDNCTLRYSNDSIFGIMETKTSQVYCHLNASAEVDDRFNQTLHSLLDRLKTTAADGDSRLKFAEDSAPVQSSNYNSTIYALLQCTPDLSKEECARCLESSFVNNMFSIPCDVEGGIRYIGPSCSVRYETHAFFDPILIDAPAPQPSQALYPPPSPTTTSSQGKSKTFRTVIAVVIPVVAVAVFLIVFRIYVGARKSRHDYMDGQDGEGEGEGEGDDDIKASELLQFDFATIRFATNNFSDANKLGQGGFGSVYKGRLSDGQEVAIKRLSNNSDQGETEFKNEVLLTGKLQHRNLVKLLGFCLERRERLLIYEFVSNKSLDYFIFDPIKRAILDWEVRSKIIRGIARGLLYLHEDSRLQIIHRDLKTSNILLDAELSPKISDFGMARLFDVNQTQGNTMTIVGTFGYMAPEYIKHGQFSIKSDVFSFGVMILEIVCGRRNSSEIRNGDNVEDLLSFVSVIPLLFVLKFGSIWLWIT. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07642 594 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Seca8g07642 594 Pfam Protein kinase domain 358 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07642 594 Gene3D Phosphorylase Kinase; domain 1 330 432 - -
Seca8g07642 594 SMART serkin_6 357 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07642 594 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Seca8g07642 594 SUPERFAMILY Protein kinase-like (PK-like) 341 575 IPR011009 -
Seca8g07642 594 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 81 571 - -
Seca8g07642 594 ProSiteProfiles Gnk2-homologous domain profile. 139 251 IPR002902 -
Seca8g07642 594 Gene3D Transferase(Phosphotransferase) domain 1 433 579 - -
Seca8g07642 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Seca8g07642 594 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Seca8g07642 594 Gene3D - 26 131 IPR038408 -
Seca8g07642 594 Gene3D - 138 251 IPR038408 -
Seca8g07642 594 ProSiteProfiles Protein kinase domain profile. 357 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07642 594 FunFam Cysteine-rich receptor-like protein kinase 10 322 432 - -
Seca8g07642 594 Pfam Salt stress response/antifungal 152 248 IPR002902 -
Seca8g07642 594 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Seca8g07642 594 FunFam Lectin-domain containing receptor kinase A4.3 433 578 - -
Seca8g07642 594 CDD STKc_IRAK 363 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07642 Seca-Chr8 173738089 173744596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07642 38 575 Receptor kinase-like Gene Family AT4G21410 47.541 8.56e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g07642 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07642 - - tpra:123882259 702.59