Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07641 ATGATTGTCCACAACTTCTCTATAACCCCATTCCTAGCACTTTTCTCTCTGTTTTTCATGCTTATTCTTCCAAGTGAATCCGCACCCACTTACAGTGCCCATTACTGCATGAACCAAACCTTTTACCAACCCAACACCACATTTCAATCCAACCTGAACACCCTCCTTTCTTCTCTCTCCTCCAACTCATCCCTTCAGTCCCACAACGGTTTCTACAGAACCGACGTGGGTCAAGACACCCCTGACGTTGCTGACGGCCTTTTCCTCTGCCGTGGCGACGTCAACGCCACCGTCTGCGAACCCTGCGTCGCCGCCGCAGCCACGAACATAACGCAACGATGTCGAAACGACAGAGAGGCGATAATCTGGTACGACGAGTGCATGCTGCGCTACTCGAACAAAGTCGATAATAACATGGGATTGGTTCCTGGATTTTATTTGAAGAATGAAGGAAGCATCATTAGCTCAAACGTTGAGCAGTTCAGTCAGTTATTGGCTGGACTGTTGAATGATTTGACAGCGAAAACTGCGGCGAGTTCTGTGTCAGAGAAGAAGTTTGCTGCTGGCGAAGTGGGATTCACGAGCACGCAGACTCTGTATGGAATGGCACAGTGCTTGCCTGAATGGCAAAGCTCTGATTGTGTCACGTGCTTTCGAAGCGCCATTGCAGGTCTTCCAGCTTGCTGTAATGGAAGTCAAGGAGCAAGGGTTCTGCTTCCGGCATGTAATATCAGATATGAACTCTATCCTTTTCTGTACAATACCACTTCAATGACCCCTTCTTCAGGAAGCAAAAGTTCATCAACTCTGGTTGTAGCAATTGTTGTCCCGATTGCTATTTTAGTGGCGCTTTTGGTTCTAGGCTGCTTTTGCTGGCGAAGAAGGCGAAACAAAAACCAGGCTGCAGTCCTGGAACTGAATGATAGCTTTAGGAGTTATTTAACAAATGAAGAAGAGTCTTTGCATTTTGACTTGGCTAAGATTGAAGCTGCCACAAATAGGTTCTCCAATGAGAACAAGATAGGTGAAGGTGGATTTGGTGTGGTTTATAAGGGTACTCTTCCTAGTGGACAAGAGATAGCAGTGAAAAGGCTATCAAGAAGCTCCTTGCAGGGTGACATAGAATTCAGGAATGAGGTTGCACTTGTTGCACAGCTTCAACACAGAAATTTAGTTAGACTTTTAGGATTTTGCTTGGAGGGGATGGAGAGGATACTTGTTTATGAATTCATCCCAAATTCAAGCCTTGACCACTTTCTATTTGATCATGAGAATCCAGGAGAGCTAGATTGGGCTAGGCGTTACAAAATTATAGTTGGGATTGCCCGAGGAATGCAATATCTCCATGAAGATTCAAGGCTAAGAATAATACATCGTGATCTCAAGGCTAGTAATGTTCTGTTAGATGCCAACATGAATCCAAAGATTTCAGATTTTGGTATGGCAAAGATTTTCCATGGAGATCAAAGTGATGTAAATACAAGAACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCTGAATATGCAATGCATGGAAAATTCTCTGTGAAATCTGATGTGTTCAGCTTTGGAGTCTTAGTTTTGGAGATCATAAGTGGCAAGAAGAACACAAGTTATCATCAATCACATCATGAGGATGGCCTTCTGAGCCTTGCTTGGAAAAATTGGACGAATCAAACACCTTTCTTGATGTTGGACCCAAAACTGAGAGGTTCTTATTCTAGAAACGAAGTTAAGAGATGCATCCATATTGCTTTATTATGCGTTCAGGAAAATCCAGCTGACAGACCTTCAATGGCGACTGTAGTACTTGTGTTGAACAGTTATTCAGTAACTTTAGCATTACCTCGACAGCCAGCATCTTTTCTGCGTGGAAGAGCAACACCAGACAGATTAAGACACCAGCTTGATTCTGATCAGTCTACTAGCTCCACAATCCCATTGTCTATTAATGATTCTTTAATCACTCAAGTATATCCCCGATAA 1992 0.4342 MIVHNFSITPFLALFSLFFMLILPSESAPTYSAHYCMNQTFYQPNTTFQSNLNTLLSSLSSNSSLQSHNGFYRTDVGQDTPDVADGLFLCRGDVNATVCEPCVAAAATNITQRCRNDREAIIWYDECMLRYSNKVDNNMGLVPGFYLKNEGSIISSNVEQFSQLLAGLLNDLTAKTAASSVSEKKFAAGEVGFTSTQTLYGMAQCLPEWQSSDCVTCFRSAIAGLPACCNGSQGARVLLPACNIRYELYPFLYNTTSMTPSSGSKSSSTLVVAIVVPIAILVALLVLGCFCWRRRRNKNQAAVLELNDSFRSYLTNEEESLHFDLAKIEAATNRFSNENKIGEGGFGVVYKGTLPSGQEIAVKRLSRSSLQGDIEFRNEVALVAQLQHRNLVRLLGFCLEGMERILVYEFIPNSSLDHFLFDHENPGELDWARRYKIIVGIARGMQYLHEDSRLRIIHRDLKASNVLLDANMNPKISDFGMAKIFHGDQSDVNTRTGRIVGTYGYMSPEYAMHGKFSVKSDVFSFGVLVLEIISGKKNTSYHQSHHEDGLLSLAWKNWTNQTPFLMLDPKLRGSYSRNEVKRCIHIALLCVQENPADRPSMATVVLVLNSYSVTLALPRQPASFLRGRATPDRLRHQLDSDQSTSSTIPLSINDSLITQVYPR. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07641 663 ProSiteProfiles Gnk2-homologous domain profile. 141 251 IPR002902 -
Seca8g07641 663 Gene3D Phosphorylase Kinase; domain 1 297 410 - -
Seca8g07641 663 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 657 - -
Seca8g07641 663 Pfam Protein tyrosine and serine/threonine kinase 337 605 IPR001245 GO:0004672|GO:0006468
Seca8g07641 663 FunFam Cysteine-rich receptor-like protein kinase 10 145 251 - -
Seca8g07641 663 CDD STKc_IRAK 341 609 - -
Seca8g07641 663 Gene3D - 146 251 IPR038408 -
Seca8g07641 663 Gene3D - 29 135 IPR038408 -
Seca8g07641 663 Pfam Salt stress response/antifungal 36 133 IPR002902 -
Seca8g07641 663 Pfam Salt stress response/antifungal 157 249 IPR002902 -
Seca8g07641 663 SUPERFAMILY Protein kinase-like (PK-like) 320 633 IPR011009 -
Seca8g07641 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Seca8g07641 663 Gene3D Transferase(Phosphotransferase) domain 1 411 616 - -
Seca8g07641 663 FunFam Cysteine-rich receptor-like protein kinase 10 293 410 - -
Seca8g07641 663 ProSiteProfiles Gnk2-homologous domain profile. 30 136 IPR002902 -
Seca8g07641 663 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Seca8g07641 663 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 135 - -
Seca8g07641 663 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07641 663 SMART serkin_6 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07641 663 FunFam cysteine-rich receptor-like protein kinase 10 411 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07641 Seca-Chr8 173717862 173720816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07641 12 663 Receptor kinase-like Gene Family AT4G05200 49.927 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g07641 PK_Tyr_Ser-Thr 3.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07641 - - ccaj:109806163 934.095