Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07638 ATGCTTCCCATAACTCTTCTGCTTCTCTGCTTCCCAATAGAACTCTTGATTAGCAGAACCCAGGCAGAGCCTACTTACAGTTATCACTTCTGTCTAAACACAACCACTTTTGCCCCAAACAGCATCTACCAAACCAATCTCAAAACTTTACTCTCTACTCTTTCTTCAAACTCCAATCAAAGTGATGGGTTCTACAACACCACCACTGGTCAAAACAACCCAAACAACACGCTCTATGGTCTCTTCCTCTGTCGGGGAGACGTCACCACTCAGACATGCCAGGACTGTGTCTCAACAGCAACCAAACAAGTCCTTCAGAGATGTCCCAACGAGAAAGAGGCTTTCATTTGGTACGATGAATGCTTGCTACAGTATTCTGATGAGTCTTTCTTTTCCACGGTGCAAGAAAGACCACTAATTCCCTTGTCCAACAGTGCCAATGCCTCGGACCAGAGTAGCTTCATGCAGTTGGTGGGTGTTACCTTGCGTGCAGTAGCTGATGAAGCAGAAAACGGTGAGAATGGCAAGAAGTTTGCCACCAAAGAAGCCAATTTCACTGGTTCTACAATTTTGTACACACTTGGACAGTGCACTCCAGATTTGTCAACACCAGATTGCAATAAGTGTCTGCAGATAGCGATTGCAAACCTACCCAATTGCTGCAATGGGAAACTGGGTGGAAGAGTGCTCACTCCTAGTTGTTATGTTAGGTATGAAGTGTACCCTTTCTACCGAAGCGTGGCTTTGGCACCAGTGCCTAGGCCAGACTTACCTCAGGAAGGAAGAAGCAAGACCTCCACTGGGACAATCATTGCCATAATTGTCACTACTGTTTTATTTATAGTGGTTGTCTTTCTCTGCTGCTGGTACCTAACAAGAGGAGCAAGGAAGAAGTATACTTCTTTTCCGGAACAAAATGTTGAAATTTCAACTGCAGAATCGCTGCAATTTGATTTAGATACAATAAAATCTGCCACAGACAACTTTTCCCGTGTCAATAAATTAGGTCAAGGAGGATTTGGGGAGGTATACAAGGGCACACTTCCTAGTGGACTTGATATAGCTGTGAAGAGGCTATCACGCAGCTCTAGACAAGGTGTTGAACAGTTCAAGAATGAGGTTGTTACAATGGCACAGCTTCAACATAGAAACCTTGTAAGGCTGCTGGGATTTTGCTTGGATGAAGAAGAAAAAATACTCATCTATGAATATGTTCCCAACAAAAGCTTGAACCATTTTCTGTTTGATCCTCAATTAGGAAATACACTGGATTGGTCAAAACGTTACATGATAATTGGTGGAATTGCACGAGGAATCCTATATCTTCATGAAGATTCACGGCTCAGAATTATACACCGTGATCTTAAAGCTAGTAATATATTGCTGGATGAAGAATTAAATCCTAAAATTTCGGATTTTGGTACAGCCAAGATTTTTGGAGGTGACCTAACTCAAGCAAACACAAATAGAATTGTTGGAACCTTTGGCTACATGTCTCCGGAATACGCAATGCATGGGCAATTTTCAGTTAAATCTGATGTGTACAGTTTTGGTGTTATGGTTCTAGAAATTATCAGTGGCAGGAAGAATAAATCTGACCTGTTGAGCTATGCCTGGAAGCTGTGGAGGGAAGGGGCGCAATTGGAATTGTTGGATCCTGCTCTAAAGGATTCTTATTCAAGAGAGGAAGTTATCAGGTGCTTTCATATAGGCTTGTTGTGTGTTCAAGAAAACCTAGCTCAGAGGCCTGAAATGCGGTCCATAGTTGTAATGTTAAACAGTCATTCTGTCACAATGCCTGATCCCCAAGAGCCAGCATTCTTCTGTCACAACAGAACATATTAA 1845 0.4244 MLPITLLLLCFPIELLISRTQAEPTYSYHFCLNTTTFAPNSIYQTNLKTLLSTLSSNSNQSDGFYNTTTGQNNPNNTLYGLFLCRGDVTTQTCQDCVSTATKQVLQRCPNEKEAFIWYDECLLQYSDESFFSTVQERPLIPLSNSANASDQSSFMQLVGVTLRAVADEAENGENGKKFATKEANFTGSTILYTLGQCTPDLSTPDCNKCLQIAIANLPNCCNGKLGGRVLTPSCYVRYEVYPFYRSVALAPVPRPDLPQEGRSKTSTGTIIAIIVTTVLFIVVVFLCCWYLTRGARKKYTSFPEQNVEISTAESLQFDLDTIKSATDNFSRVNKLGQGGFGEVYKGTLPSGLDIAVKRLSRSSRQGVEQFKNEVVTMAQLQHRNLVRLLGFCLDEEEKILIYEYVPNKSLNHFLFDPQLGNTLDWSKRYMIIGGIARGILYLHEDSRLRIIHRDLKASNILLDEELNPKISDFGTAKIFGGDLTQANTNRIVGTFGYMSPEYAMHGQFSVKSDVYSFGVMVLEIISGRKNKSDLLSYAWKLWREGAQLELLDPALKDSYSREEVIRCFHIGLLCVQENLAQRPEMRSIVVMLNSHSVTMPDPQEPAFFCHNRTY. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07638 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Seca8g07638 614 FunFam cysteine-rich receptor-like protein kinase 10 405 599 - -
Seca8g07638 614 Gene3D - 139 243 IPR038408 -
Seca8g07638 614 Gene3D - 23 130 IPR038408 -
Seca8g07638 614 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 130 - -
Seca8g07638 614 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Seca8g07638 614 Gene3D Transferase(Phosphotransferase) domain 1 405 603 - -
Seca8g07638 614 FunFam Cysteine-rich receptor-like protein kinase 10 293 404 - -
Seca8g07638 614 CDD STKc_IRAK 335 593 - -
Seca8g07638 614 SUPERFAMILY Protein kinase-like (PK-like) 315 609 IPR011009 -
Seca8g07638 614 Gene3D Phosphorylase Kinase; domain 1 291 404 - -
Seca8g07638 614 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Seca8g07638 614 Pfam Protein tyrosine and serine/threonine kinase 332 591 IPR001245 GO:0004672|GO:0006468
Seca8g07638 614 ProSiteProfiles Protein kinase domain profile. 329 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07638 614 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 609 - -
Seca8g07638 614 SMART serkin_6 329 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07638 614 ProSiteProfiles Gnk2-homologous domain profile. 25 130 IPR002902 -
Seca8g07638 614 Pfam Salt stress response/antifungal 146 240 IPR002902 -
Seca8g07638 614 Pfam Salt stress response/antifungal 31 127 IPR002902 -
Seca8g07638 614 FunFam Cysteine-rich receptor-like protein kinase 25 138 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07638 Seca-Chr8 173699399 173703058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07638 15 608 Receptor kinase-like Gene Family AT4G05200 51.535 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g07638 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07638 - - vvi:100257888 716.072