Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07637 ATGTCAAAAGACAAACTGCAACTCTGCATCCACCTCTGGTATATACTGTCCTCATCAAAGAATCACACACCCATCGATCAACCCTTCCATATGGCTTCCTACATCAACCTGATCTTTCTTTTATTCCTCATGAAATTTGCGACTACTAAAGCACAGGACCCTAATTTTCTTTACCAAGTGTGCTCAAAAAACAAATTCATAGCAAACAGCACCTATCAAGTGAACCGTAGAACCCTCTTCTCTTCCTTATCTTCCAAAGCCACCGCCAACACTCAATTCTTCAACAACACCGTCGCCGACGCAGTGTACGGAGTGTTCATGTGCAGGGGTGACATCCCCTCCCAGCTATGCGGTTATTGTGTGGGAAACGCAACCCAACGACTATCCACACACACAGAGTGCTCCTTGGCCATAGCAGCAGTGATGTGGTACGACGAGTGTATGGTTCGTTATTCTAACCGCTCTTTCTTCTCCACTGTGGCCACAGGGCCTGGCTATGTCCTTCCCAGCCCCACCAATATGACCAACCAGGAAACCTTCAACCGTTTGTTGTATGACACGTTGAACGAAACTGCAGATGAAGCGGCAAATTCACCTACTGGTGCTGAAAAATTCGCCACAAAGGAAGCAAAGATATCTATATTTCAGAATCTTTACTGTCTTGCTCAGTGCACGCCAGATGTGTCACCCAGAGATTGCAGAAGCTGTCTGTTTAGTTTGATAAACTCGGACCTTCCACGGTGCTGTGCAGGAACACAGGGAGGAAGAGTTTTGTATCCAAATTGCATCATCAGGTTTGAAATTTACCCTTTCTATCGATCCCTTACTTTGGCGCCAACGCCAACACCGGTTCCTCCAACGAATTCAGAAAATAAAAGAGGTAGATCACGAACAATAATCTTAGTTGTTATTCCCATTGTGGTCTCCGCGACCGTCTTTTCTTTTTGCTGCTATATGCTAAAGAGAAAAGCAAGACAGCGCAAGTATAGGACTGATCTCCTCAGAGAAAACTTTGGTCGTGAAAGTACCACTTTAGAGGGGTTGCAATTCGACTTGGCTAGTATTGCAGCAGCAACAAACAACTTTTCACATGAGAACAAAATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCACCCTTCCTGATGGACGACTTATAGCTGTCAAGAGGCTTTCAACAAGTTCTACACAAGGTTCAACTGAGTTCAAGAATGAGATTTTATTGATAGCTAAGTTCCAGCATAGAAACCTTGTGGCATTCATAGGTTTCTGCTTAGAAGAGCAAGAGAAGATTCTTATTTATGAATACGTGTCGAATGGAAGCCTCGATTACTTTCTATTTGGTACTGAACAACAAAAGTTATCATGGCCTGAGCGATATAAAATTATAGGAGGAACTGCTTTAGGAATTCTTTATTTACATGAATATTCTCGACTTAAAGTTATACATCGTGATCTCAAACCTAGTAATATTTTATTAGATGAAAATATGAACCCTAAAATATCAGATTTTGGCATGGCTAGAATTGTTGAAATTGATCAAGATCGGGGGAAAACGAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGCTTGGACAATTTTCTGAAAAAACAGATGTTTTTAGTTTTGGAGTCATGGTTCTAGAGATTATTACTGGAAAAAGGAATGCTAATTCATATGAATCAGATAATGATGCAAAAGGCCTCTTGAGCCATGTTTGGAGACAATGGAGTGACCAAACACTATTGAGCATATTGGACCCAAATATGAATGAAGATTATTCTCAAATTGAGGTTATTAAGTGTATTCAGATTGGTTTATTATGTGTTCAAGAAAACCCAATTGCTAGACCTACAATGACATCTGTGGTTTCATATCTTAATAGTCACTCACTTGAATTGCCAGTTCCACGACAACCGACATTTTTGTTGCATGGTAGAATGGATCAAAAAACTAGATCACAACAGGAATCAAGTTCTGATCAACATGCCAATAGTTCTACTTCATTCTCTATTAATGAGATGTCTATAAAAACCTCTGCATCAGTGTTCAACAACGTCAGCTGCACAACCAACGAGACTTTTACTCCAAACAGCACCTTCCACACCAACCTCAACACCCTTCTCTCTTCTCTTTCCTCCAACGCCACCGGCGATGTCAGATTCTTCAACGCAACCGCAGGAGGAAGCGATTCGGACAGTACAGTCTACGGCCTCTTCATGTGCCGTGGAGATGTTCCAATTGCTCTGTGCAGAGAGTGCATCGGTTTCGCAACCCAAACCATAGCCTCATCGTGTCCATCATCAAAAGAAGCTGTGATCTGGTACAACGAGTGCTTGTTGCGTTACTCCTACAGGTTCATCTTCTCTAAAATGGAAACATGGCCAAGGTACCAGATCAAGATTCCAATGGGGGACCCTGTGCTTTTGCACAGTAATGGCTTCTACACTGCATTAGGATCCATTTTGAATTTCCTCCCAAAAGAAGCAGCTCTGGCTCTTACAGGGAATAGCAAATTCGCCGTTAAGCAAGAAAATGCTTCCGCAAACATAACCCTCTACGGCCTTGCGCAGTGCACGCCGGACTTGTCCGCCGGCGACTGCACACGGTGTGTGACGGTTGCGGCGGCGGAATTTCCTGAGTCCTGTTGCGGAGGTAGCATAGGGGAAAGTGTTCTGTATCCAAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCGGGAACCTCGGCGCCAACAGCGATTAATGTGACAGGAGATACAAATATTCCGACACATGTGATTGTGATCATTGTTGTCTTGGTTGTCATTTTGGTGATGATTTGTTGCATTGGCTTCTGTTTCTTATGGATAAAAGCGAGGAAGAGACGTAAGGCCAGCCTCAGAGAAAACCTTGGACTTGAAATTACTACCTTGGAGTCCTTGCAATTTGATTTGGCTACAATTGAAATAGCAACGAACAAGTTTTCTAAAGATAGCAGGATAGGTAAAGGGGGGTACGGAGAAGTCTACAAGGGAATTCTCCCTGATGGACAAGAAATAGCTGTGAAGAGACTGTCCAGAAATTCTGGGCAAGGAGTGGAGGAATTCAAAAATGAAGTGTTGTTAATTGCTAAACTTCAACACAGAAATTTGGTGAGGTTAATAGGATTTTGTCTTGAAGACAGAGAGAACATACTTATCTATGAATATGTGCCTAACAAGAGCCTTGATCACTTCCTATTCGATCCCCAAAAGCAAACACAATTAACTTGGCCTGAAAGGTATAATATCGTAAAAGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTCAAGATTATACATCGTGATATCAAACCGAGTAATGTTCTTTTAGATAACAACATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGCTATAGAGCAAATTCAAGGATCTACAAACAGAGTTGTAGGCACATATGGCTATATGTCTCCTGAATATGCAATGCATGGACATTTCTCTGTGAAGTCTGATGTCTTCAGTTTTGGAGTTATGGTTCTTGAGATTATTAGCGGGAAAAAGAATTCTTATTCTTTTGAATCATGTCGTGTTGATGACCTCTTGAGCAATGCTTGGAATCAATGGAAGGATGAATCGCCATTTGAGTTGGTGGATCCAATTATGGTAGAATCTTATAGCCCAAAAGAAGTTGAGAGGTGTATGCAGATTGGTTTATTGTGTGTTCAAGAAAATCCAGATGACAGACCTACAATGGGAACCGTTGTTTCGTACCTTCATAATCCCTCAGTTGAGATGCCATTTCCTCTGGAACCAGCATTTTTCATGCATGGCAGAACAAGAAGACATGAATCATATTCTTCAGGTCACACCACCAATCATTCTTTATCGTCCTCTGTAAATATGATGTCTACGACTAACTTCTTCCCCCGATAG 3966 0.417 MSKDKLQLCIHLWYILSSSKNHTPIDQPFHMASYINLIFLLFLMKFATTKAQDPNFLYQVCSKNKFIANSTYQVNRRTLFSSLSSKATANTQFFNNTVADAVYGVFMCRGDIPSQLCGYCVGNATQRLSTHTECSLAIAAVMWYDECMVRYSNRSFFSTVATGPGYVLPSPTNMTNQETFNRLLYDTLNETADEAANSPTGAEKFATKEAKISIFQNLYCLAQCTPDVSPRDCRSCLFSLINSDLPRCCAGTQGGRVLYPNCIIRFEIYPFYRSLTLAPTPTPVPPTNSENKRGRSRTIILVVIPIVVSATVFSFCCYMLKRKARQRKYRTDLLRENFGRESTTLEGLQFDLASIAAATNNFSHENKIGKGGFGEVYKGTLPDGRLIAVKRLSTSSTQGSTEFKNEILLIAKFQHRNLVAFIGFCLEEQEKILIYEYVSNGSLDYFLFGTEQQKLSWPERYKIIGGTALGILYLHEYSRLKVIHRDLKPSNILLDENMNPKISDFGMARIVEIDQDRGKTNRIVGTYGYMSPEYAMLGQFSEKTDVFSFGVMVLEIITGKRNANSYESDNDAKGLLSHVWRQWSDQTLLSILDPNMNEDYSQIEVIKCIQIGLLCVQENPIARPTMTSVVSYLNSHSLELPVPRQPTFLLHGRMDQKTRSQQESSSDQHANSSTSFSINEMSIKTSASVFNNVSCTTNETFTPNSTFHTNLNTLLSSLSSNATGDVRFFNATAGGSDSDSTVYGLFMCRGDVPIALCRECIGFATQTIASSCPSSKEAVIWYNECLLRYSYRFIFSKMETWPRYQIKIPMGDPVLLHSNGFYTALGSILNFLPKEAALALTGNSKFAVKQENASANITLYGLAQCTPDLSAGDCTRCVTVAAAEFPESCCGGSIGESVLYPSCIVRYETYPFYQHSGTSAPTAINVTGDTNIPTHVIVIIVVLVVILVMICCIGFCFLWIKARKRRKASLRENLGLEITTLESLQFDLATIEIATNKFSKDSRIGKGGYGEVYKGILPDGQEIAVKRLSRNSGQGVEEFKNEVLLIAKLQHRNLVRLIGFCLEDRENILIYEYVPNKSLDHFLFDPQKQTQLTWPERYNIVKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMNPKISDFGMARMVAIEQIQGSTNRVVGTYGYMSPEYAMHGHFSVKSDVFSFGVMVLEIISGKKNSYSFESCRVDDLLSNAWNQWKDESPFELVDPIMVESYSPKEVERCMQIGLLCVQENPDDRPTMGTVVSYLHNPSVEMPFPLEPAFFMHGRTRRHESYSSGHTTNHSLSSSVNMMSTTNFFPR. 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07637 1321 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 688 793 - -
Seca8g07637 1321 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 691 1316 - -
Seca8g07637 1321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Seca8g07637 1321 SMART serkin_6 998 1269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07637 1321 SMART serkin_6 362 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07637 1321 CDD STKc_IRAK 1004 1269 - -
Seca8g07637 1321 Pfam Protein kinase domain 363 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07637 1321 FunFam cysteine-rich receptor-like protein kinase 10 438 640 - -
Seca8g07637 1321 ProSiteProfiles Gnk2-homologous domain profile. 803 912 IPR002902 -
Seca8g07637 1321 Pfam Protein tyrosine and serine/threonine kinase 1001 1268 IPR001245 GO:0004672|GO:0006468
Seca8g07637 1321 FunFam Cysteine-rich receptor-like protein kinase 25 164 271 - -
Seca8g07637 1321 SUPERFAMILY Protein kinase-like (PK-like) 347 663 IPR011009 -
Seca8g07637 1321 Pfam Salt stress response/antifungal 61 153 IPR002902 -
Seca8g07637 1321 Pfam Salt stress response/antifungal 172 268 IPR002902 -
Seca8g07637 1321 Pfam Salt stress response/antifungal 820 910 IPR002902 -
Seca8g07637 1321 Pfam Salt stress response/antifungal 695 790 IPR002902 -
Seca8g07637 1321 MobiDBLite consensus disorder prediction 654 675 - -
Seca8g07637 1321 Gene3D Transferase(Phosphotransferase) domain 1 1074 1276 - -
Seca8g07637 1321 Gene3D Transferase(Phosphotransferase) domain 1 438 640 - -
Seca8g07637 1321 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 321 437 - -
Seca8g07637 1321 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 961 1073 - -
Seca8g07637 1321 ProSitePatterns Protein kinases ATP-binding region signature. 1004 1026 IPR017441 GO:0005524
Seca8g07637 1321 FunFam cysteine-rich receptor-like protein kinase 10 1074 1276 - -
Seca8g07637 1321 ProSiteProfiles Protein kinase domain profile. 998 1274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07637 1321 Gene3D Phosphorylase Kinase; domain 1 960 1073 - -
Seca8g07637 1321 Gene3D Phosphorylase Kinase; domain 1 322 437 - -
Seca8g07637 1321 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Seca8g07637 1321 SUPERFAMILY Protein kinase-like (PK-like) 984 1305 IPR011009 -
Seca8g07637 1321 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 54 156 - -
Seca8g07637 1321 ProSiteProfiles Gnk2-homologous domain profile. 54 156 IPR002902 -
Seca8g07637 1321 ProSiteProfiles Gnk2-homologous domain profile. 689 794 IPR002902 -
Seca8g07637 1321 ProSiteProfiles Protein kinase domain profile. 362 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07637 1321 Gene3D - 166 271 IPR038408 -
Seca8g07637 1321 Gene3D - 53 156 IPR038408 -
Seca8g07637 1321 Gene3D - 686 793 IPR038408 -
Seca8g07637 1321 Gene3D - 816 912 IPR038408 -
Seca8g07637 1321 CDD STKc_IRAK 368 634 - -
Seca8g07637 1321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1119 1131 IPR008271 GO:0004672|GO:0006468
Seca8g07637 1321 ProSiteProfiles Gnk2-homologous domain profile. 162 271 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07637 Seca-Chr8 173677322 173692038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07637 38 683 Receptor kinase-like Gene Family AT4G05200 45.590 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g07637 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07637 - - jcu:105649397 1207.97