Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07622 ATGGCGCAACAACAAGAACACTCCCCCATTGGTCTCCACACCGTAGACGATTTTTACTTCTCAGCGCTCTTCGATGATGCTGGCCTTGTTCCCGTCTCCGATGACAAGTACGCTCAAGAATTGCAGTTACAGGAGACTCTCATGGCCTCTGTCACCATTTCCCTAAACGCGCCGCCGCCATTTTCTTCACCACCACCCTTCCTCTGCTTAGCGTCTTCATCAAAGGCCGTTGAAGTTCGCCACCTTGCCTCCATGACAAAGATGCTAGAGTTGGTCTCTGAAGAATCATCAGGTGAATCCTCATTCATCATCTGCGAGATTTGCGCAGAAGCGAAAGGGACTGAGGAGATGTTCAGGAACCAGAGATGTGGCCATTCCTTCTGCTCTGACTGTGTCACCAAACAAGTGGCCACAAAGATCCAAGACAAAATAACGGTTGTTTCATGCCCTGGTTTGAACTGCAAGGGTGTTTTGGAGCTTGAGGTTTGCAGGCCAATGCTCCCTAAAGAGCTTATTGAAAGGTGGGATGATGCACTATGTGAGGCTCTTTTACTTACAGCTCCTAAATTCTATTGCCCCTTTAGGGATTGTTCTGTTATGATGCTGGATGACAATGAAGGGGAAGAAATTAGAGAGTCTGAGTGTCCCTTTTGCCATAAACTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGGTTGGCTGTGAGGAGTTCCAGACTCTGAATGAGGATGAGAGAGGGAGGGAAGATCTCCTTGTTAGAGAGCTTGCTAGTGAAAAGAATTGGAGCAGGTGTCCCAAATGCAAGTACTATGTGGAAAAGACTGAAGGGTGTTTGCATATTACCTGCAGGTGCCAGTTTGAGTTTTGCTATGCGTGCGGAGAACAATGGACTTCTACTCATCGTGGCTGCCAGAGAAATTAG 927 0.4779 MAQQQEHSPIGLHTVDDFYFSALFDDAGLVPVSDDKYAQELQLQETLMASVTISLNAPPPFSSPPPFLCLASSSKAVEVRHLASMTKMLELVSEESSGESSFIICEICAEAKGTEEMFRNQRCGHSFCSDCVTKQVATKIQDKITVVSCPGLNCKGVLELEVCRPMLPKELIERWDDALCEALLLTAPKFYCPFRDCSVMMLDDNEGEEIRESECPFCHKLFCARCHVPWHPGVGCEEFQTLNEDERGREDLLVRELASEKNWSRCPKCKYYVEKTEGCLHITCRCQFEFCYACGEQWTSTHRGCQRN. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07622 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
Seca8g07622 308 FunFam RBR-type E3 ubiquitin transferase 238 308 - -
Seca8g07622 308 SUPERFAMILY RING/U-box 175 240 - -
Seca8g07622 308 FunFam RBR-type E3 ubiquitin transferase 100 186 - -
Seca8g07622 308 ProSiteProfiles TRIAD supradomain profile. 101 308 IPR044066 -
Seca8g07622 308 SUPERFAMILY RING/U-box 99 182 - -
Seca8g07622 308 CDD Rcat_RBR_unk 262 298 - -
Seca8g07622 308 ProSiteProfiles Zinc finger RING-type profile. 105 150 IPR001841 -
Seca8g07622 308 SUPERFAMILY RING/U-box 247 306 - -
Seca8g07622 308 CDD BRcat_RBR_unk 187 239 - -
Seca8g07622 308 Gene3D - 234 308 - -
Seca8g07622 308 ProSitePatterns Zinc finger RING-type signature. 123 132 IPR017907 -
Seca8g07622 308 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 298 IPR031127 GO:0004842|GO:0016567
Seca8g07622 308 Pfam IBR domain, a half RING-finger domain 255 305 IPR002867 GO:0008270
Seca8g07622 308 Pfam IBR domain, a half RING-finger domain 175 236 IPR002867 GO:0008270
Seca8g07622 308 SMART ibrneu5 246 305 IPR002867 GO:0008270
Seca8g07622 308 SMART ibrneu5 173 236 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07622 Seca-Chr8 173495955 173497677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07622 98 295 C3H Transcription Factor Family AT2G19610 28.986 1.08e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07622 K11975 - pop:18094363 378.252