Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07620 ATGTCATCTAACAAGAATTCTGCAGAGAATGAGTCGAGAAGGAACAAAGGGAAAGAAGTTGCGAGTGACAGCGTGGAAGTTCCTCCTGCCGTTGACGTTGACGAGGCCCAAGAGGATCATGATTCAAGCAAGAGGAAGCAGTACCACCGCCACTCTCAGCACCAGATACAACAGATGGAAATGTTCTTCAAGGAGTGCCCTCACCCAGATGACAAGCAAAGGAAAGCCTTGGGCGATGAGCTCGGGCTTGACCCTTTGAAAATCAAGTTTTGGTTCCAAAACAAGCGTACCCAAGTGAAGGCTCAACAAGAACGCCATGAGAATGCTCTTCTAAAGGGTGAGAATGAAAAGCTTCGTGCTGACAATGTTAGATACAAGGAGGCACTGAGTCACGCTACATGCCCTACCTGTGGAGGTCCCTCTGTTGGTGAAATGTCCTTTGACGAACAACACTTGAGAACTGAGAATACCCGATTAAGAGAATAG 486 0.4753 MSSNKNSAENESRRNKGKEVASDSVEVPPAVDVDEAQEDHDSSKRKQYHRHSQHQIQQMEMFFKECPHPDDKQRKALGDELGLDPLKIKFWFQNKRTQVKAQQERHENALLKGENEKLRADNVRYKEALSHATCPTCGGPSVGEMSFDEQHLRTENTRLRE. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07620 161 FunFam Homeobox-leucine zipper protein HDG1 32 118 - -
Seca8g07620 161 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 161 IPR042160 -
Seca8g07620 161 SUPERFAMILY Homeodomain-like 39 106 IPR009057 -
Seca8g07620 161 SMART HOX_1 44 106 IPR001356 GO:0003677
Seca8g07620 161 MobiDBLite consensus disorder prediction 1 55 - -
Seca8g07620 161 Coils Coil 101 128 - -
Seca8g07620 161 Pfam Homeodomain 45 100 IPR001356 GO:0003677
Seca8g07620 161 MobiDBLite consensus disorder prediction 138 161 - -
Seca8g07620 161 Gene3D - 32 117 - -
Seca8g07620 161 CDD homeodomain 45 103 IPR001356 GO:0003677
Seca8g07620 161 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07620 Seca-Chr8 173465603 173466290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07620 44 161 Homeobox Transcription Factor Family AT4G21750 74.790 1.51e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca8g07620 Homeodomain 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07620 K09338 - fve:101311833 211.46