Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07613 ATGCAAGAGTTTTTGGGCTCCGTTCGCCGATCCTTTGTTTTCAGAAGTCCATCCTCACACGGTGACGATGGACCCTTCGCCGGAATTGCCGACAAGATTGGCTCCGCCATTCGCAAATCGCGAATCGGCCTCAAGCCTCTTCCTCCGCCGCCCATACGGTGGCGCAAGGGCGAATTAATCGGTTCTGGTGCCTTTGGTCGCGTCTACATGGGCATGAACCTTGATTCCGGGGAGCTTATTGCTGTCAAACAAGTTTTGATTGCGCCTGGTACCGCTTCCAAGGAGAATACGCAGGCTAATATTCGGGAGCTCGAAGAAGAAGTGAAGCTCCTCAAGAATCTTAAGCATCCGAATATTGTAAGGTACTTGGGGACTGCTAGAGAGGAGGATTCCTTAAATATTCTGCTGGAGTTTGTACCTGGTGGATCTATCTCATCACTTTTGGGGAAATTCGGATCCTTCCCTGAGTCCGTTATAAGAATGTATACAAAACAGATTTTACTTGGCCTTGAATACCTTCACAATAACGGAATTATTCACAGGGATATTAAGGGCGCAAACATTCTAGTTGATAACAAAGGGTGCATTAAACTTGCAGACTTTGGTGCATCCAAGAAAGTTGTTGAATTGGCTACCATAAATGGTGCAAAGTCAATAAAGGGTACCCCACACTGGATGTCACCTGAAGTTATTTTACAGACAGGACATACAATGTAA 717 0.4603 MQEFLGSVRRSFVFRSPSSHGDDGPFAGIADKIGSAIRKSRIGLKPLPPPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIAPGTASKENTQANIRELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQILLGLEYLHNNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSIKGTPHWMSPEVILQTGHTM. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07613 238 SMART serkin_6 54 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07613 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Seca8g07613 238 ProSiteProfiles Protein kinase domain profile. 54 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07613 238 CDD STKc_MAPKKK 53 237 - -
Seca8g07613 238 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 49 236 - -
Seca8g07613 238 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Seca8g07613 238 Gene3D Transferase(Phosphotransferase) domain 1 53 238 - -
Seca8g07613 238 Pfam Protein kinase domain 55 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07613 238 SUPERFAMILY Protein kinase-like (PK-like) 53 236 IPR011009 -
Seca8g07613 238 FunFam Serine/threonine-protein kinase STE11 51 144 - -
Seca8g07613 238 Coils Coil 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07613 Seca-Chr8 173418010 173419655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07613 1 238 MAP Kinase Kinase Kinase AT3G06030 76.680 1.01e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca8g07613 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07613 - K20606 gmx:100795863 398.282