Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07607 ATGAAGGAAGAATTGTCAGGAGAGGGGAAATTTAATGTTATGATAACACACTATGATCTTATAATGAGAGATAAGGCATTTCTCAAGAAAATTCAATGGCACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAGAACCTTGGACTCTGGATATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTCTGCAGGAATTGTGGTCCCTGCTTAACTTTCTCCTTCCAAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTGGAAAATCTCAGGTCATACTTAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAACGGTTCTGGAAAATCAAAAAGTCTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGAATATGATATGTATAAACGGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACATTCTCGAAATTTATTTGCGACTACATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAACGAGGCTCCCTACTACGAAAATTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCGCAAATGGATCAACAAGCTGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGCGCAAAACAAAAGATGGGGATTGATGCCAAGGTCATTCAGGCAGGACTTTTCAACACAACCTCAACAGCTCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGAAGAGGTACAAGGTCACTTGGGAACGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAATTACAGATCTCGTCTCATGGAGGAGCATGAATTGCCAGATTGGGTGTATTCTCCTCTTAATAAGGATGATAAAGTTAAAGATTCCAACGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTGTGGAGAATGGGGAAGACATGTCAAGGCTTTCAGTTAAGGGGAAAAGAAGAGACCGTCTCTCATCTGACAGCACTGCACAAGCTAGTGATAATGCGGGGGTAGAAGAAAGTTTATTAGACTTGAGGACCGAAAGTGTTTCCATGGCAAATGAGAGAACAAGTGAAGAAGATAGTTTCCATGTGACCCCTGCTTCAAAGAGATTCAAGCCTGAAGGGACAAATTTCCAGAAACATGCATACGAGGATGTCAGAGGAAGTGGTTTGAACCAACGTGTATTATCCTGGAATACTCACAAAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTATCCGATACTAGAGGGCAGACTTCAAATGGAAGAGCAAACTGGAACTGA 1848 0.4177 MKEELSGEGKFNVMITHYDLIMRDKAFLKKIQWHYLIVDEGHRLKNHESVLARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTRSLGNDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKDDKVKDSNGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDMSRLSVKGKRRDRLSSDSTAQASDNAGVEESLLDLRTESVSMANERTSEEDSFHVTPASKRFKPEGTNFQKHAYEDVRGSGLNQRVLSWNTHKKKRSSYLGQGSLSDTRGQTSNGRANWN. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07607 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 136 IPR027417 -
Seca8g07607 615 Pfam Snf2-ATP coupling, chromatin remodelling complex 428 487 IPR029295 GO:0042393
Seca8g07607 615 MobiDBLite consensus disorder prediction 499 559 - -
Seca8g07607 615 CDD SF2_C_SNF 211 345 - -
Seca8g07607 615 PANTHER SNF2/RAD54 HELICASE FAMILY 2 515 - -
Seca8g07607 615 FunFam Probable ATP-dependent DNA helicase CHR12 142 440 - -
Seca8g07607 615 Pfam SNF2-related domain 9 202 IPR000330 GO:0005524|GO:0140658
Seca8g07607 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 224 391 IPR001650 -
Seca8g07607 615 MobiDBLite consensus disorder prediction 538 553 - -
Seca8g07607 615 MobiDBLite consensus disorder prediction 587 615 - -
Seca8g07607 615 SMART SnAC_2 427 487 IPR029295 GO:0042393
Seca8g07607 615 Gene3D - 142 442 IPR027417 -
Seca8g07607 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 89 IPR014001 -
Seca8g07607 615 Coils Coil 425 445 - -
Seca8g07607 615 Gene3D - 1 135 IPR038718 -
Seca8g07607 615 SMART helicmild6 250 334 IPR001650 -
Seca8g07607 615 Pfam Helicase conserved C-terminal domain 221 334 IPR001650 -
Seca8g07607 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 388 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07607 Seca-Chr8 173314172 173317554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07607 219 362 RAD5 or RAD16-like Gene Family AT5G22750 37.671 4.44e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g07607 SNF2_N 4.7e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07607 - - gmx:100786280 1135.55