Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07601 ATGGTTCATCAAAAACAAATGCTGCACCTTCAGATTTCTGCTGCTGCTGCTACCTATGTGTTCCTTTGCTTCACTGCAACCGTTACAGTGATAACCACAATTCAAGCACAAACTGATCAGTCCTTCCTCACCTATGACTGTCCAAACACAACCACCTTTTCTCCCAACACTACCTACCAAACAAACCTCAATCACCTCCTTTCTTCGCTTGCATCAAATTCCACCCTCGAAAACGGCTTCTACAACACCACCGTCGGTGTCAACAGCAACACCGTGTACGGCGTCTTCCTCTGCCGTGGAGATCTCACTCCCGAAGCATGCAAGGACTGTGTTTCCATCGCGACCAAACAAGTGCTTCAAACGTGTCCTGTAGAGAAGGAATCGGTCATTTGGTTCGCCGAATGCATGATACGTTACTCCTACCAGTCCTTCTTCTCCATCGCTGCAGAAGTGCCTGTGTATGTTCTGATGAACACGGCAAGTGTATCGGAGCATAGTCGCTTCATGGAACTGTTGAGTAACACCATGAACTCAGTGGCGGTTAAAGCAGCAAATGGTGGAGCTGACAAGAAATTTGCAACAGAAGAAGCAAATTTTTCTAGCTTCCAAACCTTGTACACGCTGGCACAGTGTACCCCTGATTTGTCACCGTTTGGCTGCCAAAAATGCCTCCAAATAGCAATTGGGCAACTAGCTATGGCTATAAAGCAAGGGGGAAGAGTGTTGATTCCAAGTTGTAATGTTAGGTATGAGTTATATCCCTTTTACCACAAAGTCACTGTGCCCACCCCATCAGAAGAACCGAGGCCAAACACACAAGAAAAATCACGGATCTCAGTAGGGATTATCATCTCAATTGTAGTTCCAGTTGTGCTTTTCTTGCTGGTTACCTTCTTTGGCTGCTGGATCATATCAGTAAGGGCAAGAACAAAGTACAGTTCAGTACCAGAAGAAAGTGGTATGGTTCAAATCTCCAGGGTAGATGAATGCTTGCAATTTGATTTTGGTACAATCGTAGAGGCCACTAACAACTTCTGTGATGACAATAAATTAGGGGAAGGAGGATTTGGTGAGGTTTATAAGGGTAAACTATATAATGGGCAAGATATTGCTGTGAAGAGGTTATCAAGAAGCTCTAGGCAAGGCTTGGATGAATTTAAGAATGAGGTGGTTTTGGTAGCCAAACTACAACACAGAAATCTTGTCAGGCTTCTGGGATTTTGCTTGGATGGAGAAGAAAAAATGCTCATTTACGAATTCTTGCCTAACAAAAGCCTCGACCATTTTCTATTTGATCCTAAAAGAGGACAGCAGCTGAATTGGCCAAGTCGATACAAGATAATAGAAGGAATTGCTCGAGGGATGCTTTATCTTCATGAAGACTCTCGACTCAGAATCATACACCGTGATCTTAAAGCATCTAACATATTATTAGATGAGAATTTAAATCCAAAAATTTCAGATTTTGGGATGGCAAGAATTTTTGGTGCTGATCAAACTCGAGGGAACACAAACAGAGTTGTTGGAACATTAGGTTACATGTCTCCGGAATATGCAATGCATGGAGAGTTTTCTGTTAAAACAGATGTGTATAGCTTTGGTGTCCTTGTTCTAGAGATAATAAGTGGAAAGAAGATCACATCCTTCCATGAATCAGGTTATGCTGAGGACCTCTTGAACTATGCTTGGAAAAAATGGAGTGGTGGGATGCCATTGGAGTTACTGGATGTGAATTTGAGAGATTCATACTCAAGAGTTGAAGTCATAAGATGCATCCATGTTGGGTTATCTTGTGTTCAAGAAGATCCAGCTCAAAGGCCAACCATGCAGACAGTAGTTCTATTGCTAAGCAGTCATTCTGTTACTCTTGAACCACCTGAACGACCTGCTGGTTATATTCATAGTAAAACCGAACAGAGCTTCCCAAGAAAAGAGTTTGAGAACTCAGATAAGTCTACAAACCAATCAGTCTCAGCCTCTGTTGATGAAGCATCCATCACTCAGGTGTACCCTCGATAG 2019 0.4269 MVHQKQMLHLQISAAAATYVFLCFTATVTVITTIQAQTDQSFLTYDCPNTTTFSPNTTYQTNLNHLLSSLASNSTLENGFYNTTVGVNSNTVYGVFLCRGDLTPEACKDCVSIATKQVLQTCPVEKESVIWFAECMIRYSYQSFFSIAAEVPVYVLMNTASVSEHSRFMELLSNTMNSVAVKAANGGADKKFATEEANFSSFQTLYTLAQCTPDLSPFGCQKCLQIAIGQLAMAIKQGGRVLIPSCNVRYELYPFYHKVTVPTPSEEPRPNTQEKSRISVGIIISIVVPVVLFLLVTFFGCWIISVRARTKYSSVPEESGMVQISRVDECLQFDFGTIVEATNNFCDDNKLGEGGFGEVYKGKLYNGQDIAVKRLSRSSRQGLDEFKNEVVLVAKLQHRNLVRLLGFCLDGEEKMLIYEFLPNKSLDHFLFDPKRGQQLNWPSRYKIIEGIARGMLYLHEDSRLRIIHRDLKASNILLDENLNPKISDFGMARIFGADQTRGNTNRVVGTLGYMSPEYAMHGEFSVKTDVYSFGVLVLEIISGKKITSFHESGYAEDLLNYAWKKWSGGMPLELLDVNLRDSYSRVEVIRCIHVGLSCVQEDPAQRPTMQTVVLLLSSHSVTLEPPERPAGYIHSKTEQSFPRKEFENSDKSTNQSVSASVDEASITQVYPR. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07601 672 ProSiteProfiles Gnk2-homologous domain profile. 150 255 IPR002902 -
Seca8g07601 672 ProSiteProfiles Gnk2-homologous domain profile. 41 144 IPR002902 -
Seca8g07601 672 ProSiteProfiles Protein kinase domain profile. 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07601 672 MobiDBLite consensus disorder prediction 626 672 - -
Seca8g07601 672 FunFam cysteine-rich receptor-like protein kinase 10 421 623 - -
Seca8g07601 672 Gene3D Transferase(Phosphotransferase) domain 1 421 625 - -
Seca8g07601 672 SUPERFAMILY Protein kinase-like (PK-like) 329 632 IPR011009 -
Seca8g07601 672 Gene3D - 150 255 IPR038408 -
Seca8g07601 672 Gene3D - 39 144 IPR038408 -
Seca8g07601 672 CDD STKc_IRAK 351 613 - -
Seca8g07601 672 Pfam Protein tyrosine and serine/threonine kinase 349 613 IPR001245 GO:0004672|GO:0006468
Seca8g07601 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 668 - -
Seca8g07601 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Seca8g07601 672 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 40 144 - -
Seca8g07601 672 SMART serkin_6 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07601 672 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Seca8g07601 672 MobiDBLite consensus disorder prediction 651 672 - -
Seca8g07601 672 Pfam Salt stress response/antifungal 47 140 IPR002902 -
Seca8g07601 672 Pfam Salt stress response/antifungal 163 253 IPR002902 -
Seca8g07601 672 FunFam Cysteine-rich receptor-like protein kinase 10 307 420 - -
Seca8g07601 672 FunFam Cysteine-rich receptor-like protein kinase 25 152 255 - -
Seca8g07601 672 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07601 Seca-Chr8 173272956 173276437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07601 23 672 Receptor kinase-like Gene Family AT4G05200 50.888 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g07601 PK_Tyr_Ser-Thr 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07601 - - qsu:112026294 739.184