Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07576 ATGGATTTTACTACTGAATTCCTTGTTTCTTTTGTAACATTTTCTCTGCTCTTCATCTCTTCTAGAGCTCGAAGGAGCACTGATAATTCTATTGAATTGGGCTCCAGTATTGTTGCTGGCACTAATTCATCATGGCGATCACCCTCTGGTGATTTTGCCTTTGGGTTCTACCACCCTCTTGGTAGTGCTCACTATCTGGTTGGAATTTGGTTTGATAAGATTCCACAGAGAACCTTGGTTTGGTCTGCAAACCGTGATGATCCAGCTCAAATTGGTTCAACCATCAATCTTACAATGAGTGGCCAACTTGTGCTGCACCATGCCAATAACACTTCATTTCTAATCTACAATGGTACAGGTGCAACTTCTGCTAGGATGCAGAATAATGGGAATTTCATCTTGATCAACTCTCTTTCAAACATCATTTGGCAGAGTTTTGATTCACCAACAGATACTATTCTACCAGGCCAAACATTGGACATGGGTCAGATGCTCTTTTCCAATGCCAATGGAACAATAGACTACTCAACTGGCCAATACAAGTTGGAGGTTCAAAAATTCGATGGCAACATTGTTATCTCTGCTTTTCGGTTTGAGGATCCTGGATATTGGTATACTTCAACTGCTCAGAATACAAGTCTGATTTACCTTAAAGAAAGTGGAAACCACCAGTGGGCAGTTATATGGGAGGCCATAACACAACCCTGCACAGTAAATGCCATTTGTGGAGTGTATGGCTTTTGCACTTCACCTGACAACAGCACAGTCAACTGTAGTTGTTTGCCTGGATACACACCTTTTGATGCAAGTGCTCCTTCCAAAGGGTGCTATCCCAGAGTAGGCATGGATTTCTGTGCTACAAATTCTTCTGCATCAGTGGTAGATATTCAAGATGCTGATATACCAAACTATGAATTTTTTGATCTACAAAGAATAGACTCATCTGATTTGGACAGTTGCAGGAAGGAAGTGATGGATGATTGCTTCTGCATGGCTGGTGTTTTGATTGACTCAGTTTGTTACAAGAAAAGGACTCCTCTTTTAAATGCCAGAATAAGCATCCCTGCCACTAGTAATAGAGTGGCACTGATTAAAGTTCTTCAAAATCAAACTCATGAAGATGATGAAAATGATTCACCTTCTAAGATCGTTTTGATTGTATCCCTCTCAGCATGCTCCTTACTTGCTGTGGTGTTTGCAGCTATTGCTATCTATCATCACCCAACATTTTGCAATCTCATGCAGAAAGAGGCACCTCCAAAGCCAAAGCCTGTGGACATCAATCTAAAGGCATTTTCATTCCAAGAGTTGAGAGAAGCAACAGATGGGTTCAAGAACAAACTTGGCCATGGAGCCTTTGGGACTGTATATATGGGCATGACTCGTCATAAGAATCTTGTAAGATTATTTGGTTTCTGCAATGAGCAGAACCATCGTCTTTTGGTTTATGAAATGATGAGAAATGGGACATTATCCAATTTCCTTTTCATGGAGGAGGATAAACCCAGTTGGAAACATAGAGTCAAAACTGTTCTTGAAATTGCTAGAGGCTTGTTGTACCTGCATGAAGAGTGTGACCCCCAGATCATCCACTGTGACATTAAGCCACAAAATGTTCTTCTTGACTCAAATTACACTGCAAAAATTGCAGATTTTGGATTAGCAAAGCTACTAATGAAAGACAGAACTCAAACAAGCACAATTGTAAGAGGGACAATGGGATATTTGGCACCAGAATGGCTAAAAAATGCACCTATCACTGCAAAAGTGGATGTGTACAGCTTTGGAGTCTTGTTGCTAGAAATCTTATTTTGCAGAAGGCACATTGAGCTGCATCAAATTGAAGACAGAGCCGAAGGTGGTGAGGAGATGATACTTGTAGATTGGGTTTTGTATTGGGCAAAGGAAGGGAATCTAAGAGTCATTGTGAGCCATGATCTTGAAGTTGTTAACGATTTCAAGAGGTTTGAGAGAATGGCAATGGTTGGATTGTGGTGCCTATCTCCTAACCCAACTCTTAGGCCATCTATTGCAAAGGTGATACACGTGTTGGAAGGAAATACAGAAGTTGGTGTTCCACCATTGTTTGATGGCCAAATGTAA 2103 0.4085 MDFTTEFLVSFVTFSLLFISSRARRSTDNSIELGSSIVAGTNSSWRSPSGDFAFGFYHPLGSAHYLVGIWFDKIPQRTLVWSANRDDPAQIGSTINLTMSGQLVLHHANNTSFLIYNGTGATSARMQNNGNFILINSLSNIIWQSFDSPTDTILPGQTLDMGQMLFSNANGTIDYSTGQYKLEVQKFDGNIVISAFRFEDPGYWYTSTAQNTSLIYLKESGNHQWAVIWEAITQPCTVNAICGVYGFCTSPDNSTVNCSCLPGYTPFDASAPSKGCYPRVGMDFCATNSSASVVDIQDADIPNYEFFDLQRIDSSDLDSCRKEVMDDCFCMAGVLIDSVCYKKRTPLLNARISIPATSNRVALIKVLQNQTHEDDENDSPSKIVLIVSLSACSLLAVVFAAIAIYHHPTFCNLMQKEAPPKPKPVDINLKAFSFQELREATDGFKNKLGHGAFGTVYMGMTRHKNLVRLFGFCNEQNHRLLVYEMMRNGTLSNFLFMEEDKPSWKHRVKTVLEIARGLLYLHEECDPQIIHCDIKPQNVLLDSNYTAKIADFGLAKLLMKDRTQTSTIVRGTMGYLAPEWLKNAPITAKVDVYSFGVLLLEILFCRRHIELHQIEDRAEGGEEMILVDWVLYWAKEGNLRVIVSHDLEVVNDFKRFERMAMVGLWCLSPNPTLRPSIAKVIHVLEGNTEVGVPPLFDGQM. 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07576 700 SMART blect_4 36 149 IPR001480 -
Seca8g07576 700 SUPERFAMILY Protein kinase-like (PK-like) 426 685 IPR011009 -
Seca8g07576 700 CDD B_lectin 47 149 IPR001480 -
Seca8g07576 700 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 459 694 - -
Seca8g07576 700 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 208 IPR036426 -
Seca8g07576 700 ProSiteProfiles Protein kinase domain profile. 306 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07576 700 Pfam Protein kinase domain 458 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07576 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Seca8g07576 700 SMART serkin_6 442 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07576 700 Gene3D - 147 232 IPR036426 -
Seca8g07576 700 Pfam S-locus glycoprotein domain 186 266 IPR000858 GO:0048544
Seca8g07576 700 Pfam D-mannose binding lectin 78 161 IPR001480 -
Seca8g07576 700 Gene3D - 24 146 IPR036426 -
Seca8g07576 700 Gene3D Phosphorylase Kinase; domain 1 461 486 - -
Seca8g07576 700 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 147 - -
Seca8g07576 700 ProSiteProfiles Bulb-type lectin domain profile. 30 147 IPR001480 -
Seca8g07576 700 Gene3D Transferase(Phosphotransferase) domain 1 487 691 - -
Seca8g07576 700 Gene3D Phosphorylase Kinase; domain 1 415 460 - -
Seca8g07576 700 PIRSF SRK 1 217 IPR024171 GO:0004674
Seca8g07576 700 PIRSF SRK 199 462 IPR024171 GO:0004674
Seca8g07576 700 PIRSF SRK 458 697 IPR024171 GO:0004674
Seca8g07576 700 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 486 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07576 Seca-Chr8 172967131 172969461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07576 379 695 Receptor kinase-like Gene Family AT5G03140 34.188 8.17e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca8g07576 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07576 - - aprc:113871840 1115.91