Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07526 ATGTTCTCTTCCACTTATCATGACTCCAACCTTTTCCCTAACTTCCCTTCATCTTCTTACCCTCCTCCCACCCTTCCTTTTTTTATTGATCCTCAAAATGATTTTGCTAATAACACCCTCCTTATTGATGATCCACTTCTTGTTCCCTTCATACCCACCACACATGATTCTCCACCAATACTATTCCCACAAGAAACTGTCGCCAATTTGTCACTTACAGATTGCACTGCTATCCTTGAACAAGATGGATGCTATGGTGCTAATAGTAACTATGCTGGTACTGGTAGCATTAGCAGCATTCCTAATTTCCTCACCCAGAAACCAGCCATAGCCAAGAAAGACAGGCACAGTAAGATTCACACATCTCAGGGCTTGAGAGACCGCAGGGTGAGATTGTCCAGTGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTGGAGTTTGACAAACCAAGTAACACCCTTGAGTGGCTCTTCACAAAGTCAGAGAATGCAATCAAGGAACTTGCTAGAAGCAAGCATAATAGCAGAGAAGGTGAAAAGTGTTCCTGTGACCCTTCTTCTTCAAATAACAAATCATTGAGTGGTGGTTCTAATAAAGGAGGGAGGAAGTTGAAATGCTCACAGAGGGAAGATGTTTGTGTTCAGACAAAAAAGGAGTCAAGAGAAAGAGCAAGAGCAAGAGCAAGAGAAAGGACTTGTTACAAGATGTGTAACAATATTGGGAAGGTGCAAGAGTTTGAAGAAATTAGATGCCCTGTAACTGCAAATGCAAATACTCAAATAAGGCCAACTATTCAGAGTACTCAACCTGAGTCATGTGCAAGATGGCATCAACTATTTCAACTTCAACCCTACCCTCATCCACTACTAGATACTATTGTAGAACCACCCACCATAGATGGATTTAACATCATTGAGGAATCTATTGTGATAAAAAGGAACATGATGTCTTCTTCTTCTTCTTCCTCTACTTCTTCTCATCACCACCAAAACCTTGTGATCCCTAATAAGGAACCAAGTTTCAACAACAATAATGACTACCCCTTATTCCCCTATTCCACCACTACTCCAAATTGGGATACAAATGGACACTCCAACTTTTGTGGACTAGCCACCATGAACATGAATCTCTCTACATGTTTCATGAACCAGTGGTAA 1164 0.4115 MFSSTYHDSNLFPNFPSSSYPPPTLPFFIDPQNDFANNTLLIDDPLLVPFIPTTHDSPPILFPQETVANLSLTDCTAILEQDGCYGANSNYAGTGSISSIPNFLTQKPAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHNSREGEKCSCDPSSSNNKSLSGGSNKGGRKLKCSQREDVCVQTKKESRERARARARERTCYKMCNNIGKVQEFEEIRCPVTANANTQIRPTIQSTQPESCARWHQLFQLQPYPHPLLDTIVEPPTIDGFNIIEESIVIKRNMMSSSSSSSTSSHHHQNLVIPNKEPSFNNNNDYPLFPYSTTTPNWDTNGHSNFCGLATMNMNLSTCFMNQW. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07526 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 108 341 IPR005333 GO:0003700
Seca8g07526 387 MobiDBLite consensus disorder prediction 318 342 - -
Seca8g07526 387 ProSiteProfiles R domain profile. 220 237 IPR017888 -
Seca8g07526 387 MobiDBLite consensus disorder prediction 178 205 - -
Seca8g07526 387 Pfam TCP family transcription factor 111 240 IPR017887 -
Seca8g07526 387 ProSiteProfiles TCP domain profile. 112 170 IPR017887 -
Seca8g07526 387 MobiDBLite consensus disorder prediction 183 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07526 Seca-Chr8 172500528 172501691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07526 110 239 TCP Transcription Factor Family AT1G67260 39.735 2.03e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca8g07526 TCP 1.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07526 - - aprc:113871835 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07526 8 172500528 172501691 Seca10g04253 10 96128652 96130586 PCT