LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g07522	ATGCATTCGGAAGGTGGGGGTGTTAGTACCACAAAGACGGAATCGGAAGCTGCTACTTTGAATTCAAAAATGAAAGGCAGTGGAAATCAAAGCAGTAAAAATATGGTTCTCAGAGCTGACAAAATTGATCTCAAGAGCTTGGATGCTGCACTTGAAAAGCACTTGAGCAGAGTCTTTTCCAGAAGCATTGAGGCAAAAAGGCCTAAAGAAGAATGGGAGATTGATCTGTCCATGTTGAATTTACGATATGTTATTGCTAAAGGGGCCTATGGTACTGTCTACAGGGGCACTCTTGATACCCAAGATGTTGCAGTGAAAGTGTTAGACTGGGGTGAGGATGGTGTTTCAAGTGCTGCGGAAACCGCTGCTTTACGAGCAGCATTTCGCCAGGAGGTTACTGTTTGGCATAAAGTTGATCATCCAAACGTCACAAAATTCATTGGAGCTTCAATGGGCACTTCAAATCTTAAGATATCTTTACGAGCTGGTGGTCAAGATTCGATTCCTTCCATGTCATGTTGTGTTATTGTTGAGTTTCTTCCCGGTGGGACGCTGAAACAATACTTGTTTAAGAATAGACGAAAGAAACTTGCCTATAAGGCTGTGATTCAGCTGGCTTTGGACCTCGCTAGAGGTCTTAGTTATCTACATTCGATGAAAATTGTTCATCGCGATGTAAAAAGTGATAACATGTTGTTAGATGCTAATCAAAAATTGAAAATAGCTGATTTTGGAGTTGCTCGGATTGAAGCTCAAAATCCGAGTGAAATGACAGGGGAAACTGGAACCATTGGATATATGGCACCAGAGGTTCTGGGTGGCAAGCCTTACAACAGAAAATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGACATGCCTTATCCAAATCTAAGCTTTGTTGATGTGTCCTCTGCCGTTGTTCGTCAGAATTTACGACCAGATATTCCAAGATGTTGCCCAAGTGCCTTAGCAAATATAATGAGAAAGTGCTGGGATAAAAAAGCAGAGAAGCGTCCAGAAATGCATGAGGTGGTGAGAATGTTGGAAGCAATTGATACGAGCAAAGGAGGTGGAATGATACCAGAAGACAAGACTCCATTTTGTTTTTGTTTTATACCGACTCGTGGTCCATAA	1152	0.4175	MHSEGGGVSTTKTESEAATLNSKMKGSGNQSSKNMVLRADKIDLKSLDAALEKHLSRVFSRSIEAKRPKEEWEIDLSMLNLRYVIAKGAYGTVYRGTLDTQDVAVKVLDWGEDGVSSAAETAALRAAFRQEVTVWHKVDHPNVTKFIGASMGTSNLKISLRAGGQDSIPSMSCCVIVEFLPGGTLKQYLFKNRRKKLAYKAVIQLALDLARGLSYLHSMKIVHRDVKSDNMLLDANQKLKIADFGVARIEAQNPSEMTGETGTIGYMAPEVLGGKPYNRKCDVYSFGICLWEIYCCDMPYPNLSFVDVSSAVVRQNLRPDIPRCCPSALANIMRKCWDKKAEKRPEMHEVVRMLEAIDTSKGGGMIPEDKTPFCFCFIPTRGP.	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g07522	383	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	39	357	-	-
	Seca8g07522	383	MobiDBLite	consensus disorder prediction	1	33	-	-
	Seca8g07522	383	CDD	STKc_MAP3K-like	85	354	-	-
	Seca8g07522	383	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	221	233	IPR008271	GO:0004672\|GO:0006468
	Seca8g07522	383	FunFam	Kinase suppressor of Ras 1	68	162	-	-
	Seca8g07522	383	ProSiteProfiles	Protein kinase domain profile.	79	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07522	383	Gene3D	Transferase(Phosphotransferase) domain 1	182	365	-	-
	Seca8g07522	383	PRINTS	Tyrosine kinase catalytic domain signature	177	190	IPR001245	GO:0004672\|GO:0006468
	Seca8g07522	383	PRINTS	Tyrosine kinase catalytic domain signature	281	303	IPR001245	GO:0004672\|GO:0006468
	Seca8g07522	383	PRINTS	Tyrosine kinase catalytic domain signature	215	233	IPR001245	GO:0004672\|GO:0006468
	Seca8g07522	383	PRINTS	Tyrosine kinase catalytic domain signature	325	347	IPR001245	GO:0004672\|GO:0006468
	Seca8g07522	383	SUPERFAMILY	Protein kinase-like (PK-like)	63	354	IPR011009	-
	Seca8g07522	383	Gene3D	Phosphorylase Kinase; domain 1	68	161	-	-
	Seca8g07522	383	SMART	serkin_6	79	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07522	383	Pfam	Protein tyrosine and serine/threonine kinase	80	354	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g07522	Seca-Chr8	172392747	172396275	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g07522	11	383	MAP Kinase Kinase Kinase	AT3G22750	72.340	0.0	592

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Seca8g07522		PK_Tyr_Ser-Thr	3.4e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g07522	-		-	gmx:100803917	628.246