Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07521 ATGAATAAACAACTGGATCCTTCGATACTGCTTAGCAATTTTATGACTCTGTTACCACAATCTACAGCTAATAATGGTCATGAAATGCATGTCGTTAATCCAATTGCTTCTGGTTTAGAACATGAAATTGTAGACTATCCTTCTGAACCAATAGCAGCCACAGATGCAGGTCAGACACAGGATAATCTTGCCAATGTTGCTTTGATGGCTAGCAATCCAAGTGAGAAAGTGGATAATCAGGTTGTTTATGTGACACACCCGAGGCGCAGTCTAGACTTTGAGATGGCCAGTGTGCAAAGGAAAAATACAGGTGATAGTTCAAACATCAATTCCAGTGCAGCAAGGTCTGATGAGAGGGATGTTGGTAATATGAAACACACTGGTGATCCACGGAAATGTGTTTTGCCGAGAATTGGTTTGCACTTGAATGCACTTGCAACCTTAAAATATTACAAAAGTATAAAAAGTGAAATGGTGTCTTCTGAAAGGCAACCTAATCTGCCCAGCTCTACTTCCTTGCATCTCCCTGCAAACCAAGAGCATCACCTATCATCAGTACCTCCATCAATGGAAAGAGATTTGGAGCCATCTAAAAATGAGGTTCAGCCCATGGAAAATTGTACCCAGTCATCAGTTTACATGGCTGGTGAAGATTTCCATCAGAATAGCCCCAAAAAGAAAAGGCGCAAGTTGGAATCAGCTGGGGAAGGGGAGTCCTGTAAGCGGTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTACTGTGAGTGCTTTGCTGCTGGAGTCTTCTGTAAAGAACCTTGCTTATGTCAGGACTGTTTCAACAAACCTATTCATGAAAATACTGTTACTCAAACTCGCAAGCAGATCCTGTCTCGTAACCCACTTGCGTTTGCTCCTAAAGTCATAAGGAGTTCTGATTCTGCACCTGAAATTGGGCAGGAACCTAACAGAACTCCAGATTCAGCACGACATAAAAGAGGATGCAATTGCAAGAAATCAAGCTGCCTGAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCGTTAGCTGCAGATGTGAAGGGTGCAAGAACACATATGGTAGAAAGGATGGTTCTCCTCCTACTGAAAGAGTAGCTGAACCTGAAGAAGAAACAAATGCATATGAAAAGGGTGTGGTGGAAAGAGCTTCACAGAAAATTGAAATTCAGAATATCAATGACCATCCAGATTGTGCTCTTACCACAACACCATCACAGCTTTCTAGATCATTGCTTCCGTTACCCTTTGATGCATCAAAGGGAAAGCATCCAAGATCTTTTGTTACTACCATCCCCTCTTCTGGATATTTTGGCAGCCAAAAGCTTGGGAATTCAAATGCTTTTGGATTTCAGCCCAAGTTTGAAAAGGCTCTTGAAACTGTTCCAGATGATGTCTCTCCAATCACTTGCATCAAAACTTCTTCCCCGAATGGCAAGAGGATCTCCTCTCTTAATTGTGCCTCTGGATCATCATCTCCTACTCGCAGAGGTAGCAGGAAGATGATATTAAAATCCATCCCGTCATTTCCTGCTCTCACCCATCACCATTAG 1581 0.4213 MNKQLDPSILLSNFMTLLPQSTANNGHEMHVVNPIASGLEHEIVDYPSEPIAATDAGQTQDNLANVALMASNPSEKVDNQVVYVTHPRRSLDFEMASVQRKNTGDSSNINSSAARSDERDVGNMKHTGDPRKCVLPRIGLHLNALATLKYYKSIKSEMVSSERQPNLPSSTSLHLPANQEHHLSSVPPSMERDLEPSKNEVQPMENCTQSSVYMAGEDFHQNSPKKKRRKLESAGEGESCKRCNCKKSKCLKLYCECFAAGVFCKEPCLCQDCFNKPIHENTVTQTRKQILSRNPLAFAPKVIRSSDSAPEIGQEPNRTPDSARHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNTYGRKDGSPPTERVAEPEEETNAYEKGVVERASQKIEIQNINDHPDCALTTTPSQLSRSLLPLPFDASKGKHPRSFVTTIPSSGYFGSQKLGNSNAFGFQPKFEKALETVPDDVSPITCIKTSSPNGKRISSLNCASGSSSPTRRGSRKMILKSIPSFPALTHHH. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07521 526 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 327 362 IPR005172 -
Seca8g07521 526 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 241 276 IPR005172 -
Seca8g07521 526 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 60 523 IPR044522 GO:0003700
Seca8g07521 526 MobiDBLite consensus disorder prediction 161 201 - -
Seca8g07521 526 MobiDBLite consensus disorder prediction 161 185 - -
Seca8g07521 526 ProSiteProfiles CRC domain profile. 239 364 IPR005172 -
Seca8g07521 526 SMART CXC_2 238 279 IPR033467 -
Seca8g07521 526 SMART CXC_2 324 365 IPR033467 -
Seca8g07521 526 MobiDBLite consensus disorder prediction 99 128 - -
Seca8g07521 526 MobiDBLite consensus disorder prediction 486 508 - -
Seca8g07521 526 MobiDBLite consensus disorder prediction 364 383 - -
Seca8g07521 526 MobiDBLite consensus disorder prediction 99 117 - -
Seca8g07521 526 MobiDBLite consensus disorder prediction 486 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07521 Seca-Chr8 172366443 172372158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07521 88 526 CPP Transcription Factor Family AT4G14770 49.561 7.03e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca8g07521 TCR 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07521 - - gmx:100811662 716.457