Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07517 ATGGCCGTCGGTAAGAACAAGCGCATCTCTAAAGGAAAGAAGGGTGGCAAGAAGAAGGCAGCTGATCCTTTTGCCAAGAAAGATTGGTACGACATAAAGGCTCCCTCTGTTTTCCAGGTTAAAAATGTGGGCAAGACCCTCGTCACTCGTACCCAGGGTACCAAGATTGCTTCAGAAGGACTCAAACATCGAGTGTTTGAGATCTCATTGGCTGATCTTCAAGGTGATGAGGAACATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAATTTCTGGGGAATGGATTTCACAACTGACAGACTGAGATCATTGGTGCGAAAATGGCAAACTCTAATTGAAGCCCATGTGGATGTGAAGACAACTGATAATTACACACTGAGGATGTTCTGTATTGGATTTACCAAGAGGAGAAGTAACCAGGTGAAGAGGACCTGTTATGCACAATCCATCCAAATTAGACAGATCCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCCACGTCCTGTGATTTGAAGGAGTTGGTTCGCAAGTTCATTCCTGAGATGATTGGAAAAGAGATTGAGAAGGCAACATCTAGCATTTACCCTCTGCAAAATGTATTTGTTCGAAAAGTCAAGATCCTTAAAGCTCCTAAGTTTGATCTTGGAAAATTGATGGGGGTTCATGGTGATTACTCAGAGGACGTTGGTACAAAGGTAGACAGACCTGCTGATGAAACAATGGCAGAGGGAACAACTGAAGTTGTTGGGGCTTGA 786 0.4402 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEISLADLQGDEEHAFRKIRLRAEDVQGRNVLTNFWGMDFTTDRLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSIQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMGVHGDYSEDVGTKVDRPADETMAEGTTEVVGA. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07517 261 MobiDBLite consensus disorder prediction 1 15 - -
Seca8g07517 261 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g07517 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Seca8g07517 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Seca8g07517 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Seca8g07517 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 253 - -
Seca8g07517 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07517 Seca-Chr8 172340285 172342498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07517 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 83.969 1.78e-160 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07517 K02984 - gmx:100805519 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07517 8 172340285 172342498 Seca8g07517 8 172340285 172342498 ECH