Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07516 ATGGCTTCTCATTCCTCAAAAAAAGAAGGCCTTAATAATTATGGTCTTTCTATACCATTCTGGGTCTCCCTCATTGTGATTCTCATCTCCATCAACCCCTCACACCAAACTACTGAATACCCTTCTTCCCCTTTCCCCCAACTAAACCCAAGGCTCTCTAAAGCTTACACAGCCCTCCAAGCATGGAAACACTCAATCACCTCCGACCCCAAAAACTTCACCTCTAACTGGCGTGGTCCCCATGTATGCAACTACACTGGTATCTACTGTGCACCAGCACCAGATGACCCTCACATGTATACAGTTGCTGGAATAGACTTAAACCATGGCAACATAGCTGGTTCATTGCCAGAGGAACTTGGTCTCTTAACTGATCTAGCCCTTTTCCACATAAACTCCAACCGCTTCTGTGGTTCACTCCCAAGTAGCTTTAGCAACCTTCACCTTCTCTTTGAGCTAGATATCAGCAACAACCAATTCTCAGGACCATTCCCTGAGGTTGTTCTCTGTCTTCCTTCACTGAAATTCTTGGATATCAGATTCAATGGGTTCCAAGGCAATGTTCCTTCCCGCCTTTTCGACCTTAAACTTGATGCTCTGTTCATCAACAACAACAAATTTCAATTCTCTTTGCCTGAAAACTTTGGAAACAGTCCTGCTTCTGTGGTCGTGTTTGCAAACAATGACCTCAAGGGTTGTATTCCATCAAGTTTGGCGAAAATGAAGGATACTCTTAATGAGATTATCATAATGAATAGTGGGTTAAGGGGTTGTTTGCCAGCGGAAATTGGGGATTTGGAGAAAGTGACGGTGTTTGATGTGAGTTTCAACAAGTTGGTTGGGGAATTGCCAGAGTCAATGGGAAGGATGAAGAGTTTGGAGCAGTTAAATGTGGCGCATAACAAGTTGTATGGTACAATTCCAGAGAGTATATGCAAGTTGCCAAGGTTGGAGAATTTCACATATTCATACAACTACTTCTGTAGTGAATCACCAGTGTGTCTGAAATTGCCAGATAAGGATGATCGTAAGAATTGTATTCCTTATAGGCCATTGCAAAGGTCAACTGAGGATTGTGCAGCTTTTTATGCACATCCTGTTCACTGTAGCGCGTTTGGTTGCTCCGTTGCAAGTCCTCCCCCACCACCGCCGCCACCTCCGCCTCCTCCTCCACCTCCGCCACCTCCACCTCCACCTCCACCACCACCACCACCACCTCCACCTCCACCTCCTCCACCACCGCCGCCACCTCCTCCTCCACCACCCCCGCCACCTCCACCTCCTCCGCCGCCGCCGCCGCCTCCCCCGGCAGCTTACTACCATTATCCCTGA 1332 0.4752 MASHSSKKEGLNNYGLSIPFWVSLIVILISINPSHQTTEYPSSPFPQLNPRLSKAYTALQAWKHSITSDPKNFTSNWRGPHVCNYTGIYCAPAPDDPHMYTVAGIDLNHGNIAGSLPEELGLLTDLALFHINSNRFCGSLPSSFSNLHLLFELDISNNQFSGPFPEVVLCLPSLKFLDIRFNGFQGNVPSRLFDLKLDALFINNNKFQFSLPENFGNSPASVVVFANNDLKGCIPSSLAKMKDTLNEIIIMNSGLRGCLPAEIGDLEKVTVFDVSFNKLVGELPESMGRMKSLEQLNVAHNKLYGTIPESICKLPRLENFTYSYNYFCSESPVCLKLPDKDDRKNCIPYRPLQRSTEDCAAFYAHPVHCSAFGCSVASPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAAYYHYP. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07516 443 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 435 - -
Seca8g07516 443 MobiDBLite consensus disorder prediction 380 430 - -
Seca8g07516 443 FunFam Leucine-rich repeat extensin-like protein 1 56 217 - -
Seca8g07516 443 SUPERFAMILY L domain-like 55 336 - -
Seca8g07516 443 PRINTS Proline rich extensin signature 415 432 - -
Seca8g07516 443 PRINTS Proline rich extensin signature 377 398 - -
Seca8g07516 443 PRINTS Proline rich extensin signature 398 414 - -
Seca8g07516 443 Gene3D Ribonuclease Inhibitor 53 220 IPR032675 -
Seca8g07516 443 Gene3D Ribonuclease Inhibitor 221 346 IPR032675 -
Seca8g07516 443 Pfam Leucine rich repeat N-terminal domain 56 90 IPR013210 -
Seca8g07516 443 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 241 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07516 Seca-Chr8 172322000 172323331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07516 46 383 Leucine-rich Repeat extension Gene Families AT3G22800 69.617 2.43e-165 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07516 - - gmx:100818195 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07516 8 172322000 172323331 Seca8g07516 8 172322000 172323331 ECH