Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07514 ATGGCTGGTAGACTACCTGGTGTTGGGTTACCACCCAGGAAGAGATCAGAACATCACCATAATAATAGATATGAATACCATGCTACCCACCGAGACGCCTACCTAAGGGATAAATATTCATTGGAGTCACCATGGTTAGATGAAACTGCTCTCAAGGCCAGACAACGCCTGCAGAAGAAGCTTGCTCACTTCTTTTCTTATTCCAGGTCAAGTGAGAGCAGCAATCCGATAAAAGAAGGAAAAGTGAGTGAAATTAGGAGGTTGGAGAAGAAGAAGGAATCGGGGTTAGGTAGGAAGATATTAGAAAGTTCATGGTTATTGCGTGGGAACAAGTTTAAGTTTAAGAAAGAGAGAAAAGTTTGTGCTGTTTGCCTAGAAGATTTTGAGGAAGACCAAGAGGTTATGAACCTTTCTTGCTCCCATAAGTACCATTCAGCATGTCTTCTCCCCTGGCTTGCATCTCATCCCCATTGTCCCTATTGTCGAACCTTAGTTCACTGTTGA 504 0.4306 MAGRLPGVGLPPRKRSEHHHNNRYEYHATHRDAYLRDKYSLESPWLDETALKARQRLQKKLAHFFSYSRSSESSNPIKEGKVSEIRRLEKKKESGLGRKILESSWLLRGNKFKFKKERKVCAVCLEDFEEDQEVMNLSCSHKYHSACLLPWLASHPHCPYCRTLVHC. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07514 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 166 IPR013083 -
Seca8g07514 167 SUPERFAMILY RING/U-box 120 165 - -
Seca8g07514 167 ProSiteProfiles Zinc finger RING-type profile. 121 162 IPR001841 -
Seca8g07514 167 SMART ring_2 121 161 IPR001841 -
Seca8g07514 167 Pfam Ring finger domain 120 162 IPR001841 -
Seca8g07514 167 CDD RING-H2_PA-TM-RING 120 162 - -
Seca8g07514 167 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 53 163 - -
Seca8g07514 167 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07514 Seca-Chr8 172293432 172295968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07514 115 165 C3H Transcription Factor Family AT3G58720 43.137 9.35e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07514 - - gmx:100527548 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07514 8 172293432 172295968 Seca8g07514 8 172293432 172295968 ECH