Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07507 ATGAACGGCGGCGGCACCGCCACCTTCCGATCCATCCTCGACAAACCCCTCAACCAGCTCACCGAAGATGACATTTCCCAGCTCACCCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCGTGGAACAAATCGCAGGCGATCCAGCAGGTCATTTCCCTCAAAGCCCTTCTGGAACCCGCCGACGATGACTCCTCCGCCCCCATCTCCTCCGCCACTCACCACCACCCTCCTACTCCTCAACCACAAGTCAGTCTCTCTCTCTCTGTTTTTTCTTTGGTTGCTCCGGCGAAGGTCCCGGCTGCTGATGAGGCTGCTCTTCATGCTGCCGATGAGCTTCAGAAATCTGTCTCCTCTGCGGAAAAACCTACGGAAACGAATGATACTAACGTTGTCAGCCCCAGAGGGTGTGCAACTAGTGGGTCATTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTCTCACCTGATAAGGCACGATCAATCATGCAGCTTGCAGCAAGTCCAGTCCAATTTCCTCAGGATGAACCTTTAAATAAAAATGCAGCAGTTTGGGCTTCTCCTTGCACCTTACCAATGGATAAGGATGTCCTCTTACCTATTGATACAGCAGTCCTTCAGGTTGCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATACAGAGAGAAAGGGAGCATAGCTCGTGATGCTGATGTAGAGGGTCAGGCAAGCAGAAAAATGTCATTACAGCGGTACCTTGAAAAGCGAAAAGACAGGGGAAGATTGAAGGGCAAGAAATTGACTGGCATAACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATGCCTCAAATGGGAATTCAAGCCGTAGTAGCACTAGCTCTCCACCACAGCCTAGGCTGCCTCTAGTTTCCAGTGGCTCAGCTGACAACCAGCTAAAAGTTGGCCTTCCAATTGATCTCAATGACAAAGATGTTCATGAATGCTAA 1017 0.4926 MNGGGTATFRSILDKPLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPADDDSSAPISSATHHHPPTPQPQVSLSLSVFSLVAPAKVPAADEAALHAADELQKSVSSAEKPTETNDTNVVSPRGCATSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLAASPVQFPQDEPLNKNAAVWASPCTLPMDKDVLLPIDTAVLQVAQTDKMVEYPLQYREKGSIARDADVEGQASRKMSLQRYLEKRKDRGRLKGKKLTGITSSNFEMYLNLPVKVHASNGNSSRSSTSSPPQPRLPLVSSGSADNQLKVGLPIDLNDKDVHEC. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07507 338 ProSiteProfiles Tify domain profile. 144 179 IPR010399 -
Seca8g07507 338 SMART tify_2 144 179 IPR010399 -
Seca8g07507 338 MobiDBLite consensus disorder prediction 291 325 - -
Seca8g07507 338 MobiDBLite consensus disorder prediction 118 138 - -
Seca8g07507 338 MobiDBLite consensus disorder prediction 122 138 - -
Seca8g07507 338 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 281 IPR040390 -
Seca8g07507 338 MobiDBLite consensus disorder prediction 71 89 - -
Seca8g07507 338 Pfam Jas motif 247 264 IPR018467 -
Seca8g07507 338 MobiDBLite consensus disorder prediction 291 321 - -
Seca8g07507 338 MobiDBLite consensus disorder prediction 67 89 - -
Seca8g07507 338 Pfam tify domain 150 178 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07507 Seca-Chr8 172211111 172216474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07507 5 293 Tify Gene Family AT4G14720 48.667 8.02e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca8g07507 tify 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07507 - - gmx:100808970 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07507 8 172211111 172216474 Seca8g07507 8 172211111 172216474 ECH