Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07503 ATGAATCGTCACCGTGGTGGAGTGAAGGAAGAGTTTCTGGGAGAAAGTTCGTCCTTTTATCAGCATCCATCAATGATGGTTTCTCCCCAACCAATTGAAGGACTTCATGAAGGTGGTCCTCCACCATTCCTCACTAAGACATATGACATAGTTGATGACCCTTCCACAAATCACATAGTTTCTTGGAGCAGTGCTAACAACAGCTTCGTTGTGTGGGATCCCCAAGCTTTCTCCATAACCCTTCTTCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGACAACTTAACACCTATGGGTTTAAGAAGGTTGATCCAGATAGGTGGGAGTTTGCTAATGAGATGTTTCTTAGAGGACAAAGAATTCTTCTAAAGAACATTAGAAGGAGGAAACCAAATCAATCTCAGGCAATGCTGCAGCAAGGTAATCTAGAGCCTTGTGTTGAGGTGGGTCGGTTTGGATTAGATGGAGGAGAAGTTGATCGGTTGAGGCGTGACAGACAAGTTCTGATGGTGGAGTTGGTCAAACTCAGACAACAGCAACAGAATACAAAAGCTCACCTTCAAGCAATGGAAGGAAGGCTTAAAAAGACTGAGCAGAAACAACAACAGATGATGAACTTCTTGGCAAAGGCAATGCAGAATCCCAACTTCCTTCAACAGTTAATGCACCAAAAGGAATGGAGAAAGGAGCTTGAGGAAGCCTTTTCCAATAAGAGAAGGAGGCCTATTGATCAAGGTCAAGGGCCTAGTAATAATGTTGAAGCTATTGGTGGTGGTGAATTAAGAGGATCATATGGTGCTGAAGATCAGTGCTCACCACCTTTTGTTAAAGTTGAACCACAGGAATACAGTGACAAATTATTAGAGTTTGAGATAACAGACCTGCAGCAAGATCTTGCCTTGAATAGTAATATTTCTGTTGAAGAGGGACAAAGTAGTGCTCAAAACATATTGGAGGAAGATATTCCTATTCAACTTGGAAGTAGAGATAAAAGCATTGATGAAGTGTTTTGGCAAGATTTGTTGAATGGGGGTATTGAAGATCAAGATGTACTAGATGTTGAAGATGTAGATATATTGGCTGAGCAACTTGGTTATTTGGCCTCTAGTCCTAAATAG 1128 0.414 MNRHRGGVKEEFLGESSSFYQHPSMMVSPQPIEGLHEGGPPPFLTKTYDIVDDPSTNHIVSWSSANNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRILLKNIRRRKPNQSQAMLQQGNLEPCVEVGRFGLDGGEVDRLRRDRQVLMVELVKLRQQQQNTKAHLQAMEGRLKKTEQKQQQMMNFLAKAMQNPNFLQQLMHQKEWRKELEEAFSNKRRRPIDQGQGPSNNVEAIGGGELRGSYGAEDQCSPPFVKVEPQEYSDKLLEFEITDLQQDLALNSNISVEEGQSSAQNILEEDIPIQLGSRDKSIDEVFWQDLLNGGIEDQDVLDVEDVDILAEQLGYLASSPK. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07503 375 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07503 375 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07503 375 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07503 375 Coils Coil 162 203 - -
Seca8g07503 375 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07503 375 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 283 IPR027725 -
Seca8g07503 375 MobiDBLite consensus disorder prediction 242 262 - -
Seca8g07503 375 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g07503 375 Gene3D - 36 133 IPR036388 -
Seca8g07503 375 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Seca8g07503 375 FunFam Heat shock transcription factor 1 36 133 - -
Seca8g07503 375 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07503 Seca-Chr8 172185395 172187656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07503 23 373 HSF AT3G22830 55.882 1.38e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca8g07503 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07503 K09419 - gmx:100809515 531.561