Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07491 ATGCCGGTGAGGCAGATGAAAGAAAGCTCAGAGCAACACCTTGTGATCAAACCCCATTTGCAGAACCCCATGAATCCAGCTAAGAAGGCACCCAAAGCTTCTCAAAATGGCAAAGGTCCACCTCCACTAGAAAGCCATAGCCAAACTTCACCTCACCCAAAGAACAAGGGAAGAAGAAGGGGTAGAGGTGGCAGAAAATCTGATCAAGGAGATGTTTTGATGAGGCCTAGTTGCAGGCCCTGCACTGTGACAAGTACTGTAAGTGGAAATGTTGAAAATGGCTACATCTCTAGTGACATAGATATGGGTTTTCCTACTTCAAGCAAGTCCTTGAGCTTTGCTCGTAGGCCTGGGTATGGACAAGTTGGAACAAAATGTGTTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATTACCCCAGAAGTGTCTTCCAGAACAGTAAATAGGTCCATCATAGGAGAACTTGTGAGGCTGTATAAAGAGTCAGATTTGGGGATGAGACTCCCTGCATATGATGGCAGAAAAAGTCTGTACACTGCAGGACAGCTTCCCTTTGCCTGGAGAGAGTTTAAGATTAAGCTTGTAGATGATGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAGTACAAGGTGGTGATCAAGTTTGTTGCACGGGCAAACTTGCATCACTTAGGCCAGTTTCTAGCTGGTAAGCGTGCTGATGCACCACAGGAGGCACTTCAAATTCTTGACATTGTACTAAGAGAGCTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCGCAACGGCTTGGAGAGGGATTGGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCATCTGCTGCATTCATTGAACCTCTTCCAGTAGTAGAATTTGTTGGCCAGCTATTGGGAAAAGATGTGCTGTCAAGGCAATTGTCGGATGCTGATCGCATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACATAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTTGTGGAATACTTCCAAGAGATGTATGGTTTCACTATTCAACATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGGTATACAAAAAGGTTGAATGAGAAGCAAATTACTGCTCTATTGAAAGTTACTTGCCAGAGACCTCGTGACCGGGAAAATGACATTTTACGGACCATGCAACAGAATGCTTACGACCAAGATCCTTATGCAAAGGAATTTGGAATTAAAATCAGTGAAAAGCTTGCTTCTGTTGAAGCACGAATTCTTCCAGCCCCATGGCTTAAATATCACGAAAGCGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCACGGAGCGTGCAAGATAGTGTTGCTCGTACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGAATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAGCCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCATCGAACAAAACTAAAGGAAAGGAACTGGAGCTTTTGTTAGCAATATTGCCAGACAATAATGGGTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTTAAAATCACTAAACAGTACCTGGCTAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGCAGAAACACTGTTCTTCTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACCATAATTTTTGGAGCAGATGTTACCCACCCTGAAAATGGAGAAGATTCTAGTCCCTCAATAGCAGCTGTAGTAGCATCCCAAGACTGGCCTGAAGTAACAAAATATGCCGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTTATACAAGATTTATACAAAACTTGGCATGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATACGGGATTTGCTGATTTCCTTTAGAAAAGCAACGGGACAAAAGCCATTGCGAATTATATTTTACAGAATTTCAGTAACACAATATAATGTGTATGCTCTTAGGAGTATGCCATTAGGAAACTCAGCACCATTAAAATATCTGAAAGTTGTATGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCAATCCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAGAGACATCACACTAGGTTGTTTGCAAACAACCATAGGGACAGGAGCAGTACAGATAAGAGTGGGAATATACTGCCTGGGACCGTCGTTGATTCTAAAATCTGCCATCCAACAGAATTTGATTTTTACCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAAAACAACTTCACCGCAGATGGAATTCAGTCTTTGACAAACAATCTTTGTTATACATATGCCAGGTGTACGCGTTCTGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCCCGTTTCTATATGGAACCAGATATGCAAGAGAATGGTTCTACAGGTGATGGTAATGCTAGTCATAGTTCCAAGGGAACAAGAGCATCTGGAGAGTGTGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 3018 0.4228 MPVRQMKESSEQHLVIKPHLQNPMNPAKKAPKASQNGKGPPPLESHSQTSPHPKNKGRRRGRGGRKSDQGDVLMRPSCRPCTVTSTVSGNVENGYISSDIDMGFPTSSKSLSFARRPGYGQVGTKCVVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIGELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLVDDEDGVNGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTMQQNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRISVTQYNVYALRSMPLGNSAPLKYLKVVWDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTGDGNASHSSKGTRASGECGVKPLPALKENVKRVMFYC. 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07491 1005 ProSiteProfiles Piwi domain profile. 609 959 IPR003165 GO:0003676
Seca8g07491 1005 Gene3D - 678 1005 IPR036397 GO:0003676
Seca8g07491 1005 Pfam Piwi domain 610 779 IPR003165 GO:0003676
Seca8g07491 1005 Pfam Piwi domain 808 958 IPR003165 GO:0003676
Seca8g07491 1005 SUPERFAMILY Ribonuclease H-like 601 960 IPR012337 -
Seca8g07491 1005 SMART PAZ_2_a_3 325 457 IPR003100 GO:0005515
Seca8g07491 1005 CDD Piwi_ago-like 479 958 IPR045246 -
Seca8g07491 1005 Gene3D - 499 672 - -
Seca8g07491 1005 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 107 960 - -
Seca8g07491 1005 SMART DUF1785_2 268 320 IPR014811 -
Seca8g07491 1005 MobiDBLite consensus disorder prediction 1 77 - -
Seca8g07491 1005 Pfam Argonaute linker 1 domain 269 318 IPR014811 -
Seca8g07491 1005 SUPERFAMILY PAZ domain 315 475 IPR036085 GO:0005515
Seca8g07491 1005 MobiDBLite consensus disorder prediction 963 984 - -
Seca8g07491 1005 Pfam Argonaute linker 2 domain 461 507 IPR032472 -
Seca8g07491 1005 Pfam N-terminal domain of argonaute 124 259 IPR032474 -
Seca8g07491 1005 FunFam Argonaute 10 499 672 - -
Seca8g07491 1005 SMART Piwi_a_2 609 959 IPR003165 GO:0003676
Seca8g07491 1005 MobiDBLite consensus disorder prediction 965 981 - -
Seca8g07491 1005 Pfam Mid domain of argonaute 518 595 IPR032473 -
Seca8g07491 1005 FunFam protein argonaute 10-like 678 1005 - -
Seca8g07491 1005 CDD PAZ_argonaute_like 320 434 - -
Seca8g07491 1005 FunFam Protein argonaute-2 314 440 - -
Seca8g07491 1005 Gene3D paz domain 314 439 - -
Seca8g07491 1005 ProSiteProfiles PAZ domain profile. 321 435 IPR003100 GO:0005515
Seca8g07491 1005 Pfam PAZ domain 344 451 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07491 Seca-Chr8 172039341 172048254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07491 1 1005 Eukaryotic Initiation Factors Gene Family AT5G43810 79.475 0.0 1651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07491 K11593 - gmx:100816999 1852.41