Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07489 ATGGCCTCTAAAACCGAAAGCGAGAATTCAACCGATACAACTCCATCATCGCCAAAGAATATATACAAAGATCCAGATGATGGGCGGCAACGGTTTTTGCTTGAATTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAACCGATATTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATATATTAAATTTATCATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTAGCAATAAGGAACTGGCACACAGACAACAATTCTACTTCTGGAAAAACTATAGGAACAATCGGCTAAAGCACATTTTACCAAGATCACTTCCTGAACCTAGTGCAACTCCTGCACCCCCTGCTCCTACTTCAACTCCAGCTCAGGCACCTGTGCCTGCACTACCTCCAGTTCCTGCTACAAATGTTGCCGTGACAGCATCATCTACTCAAGCTCCTTCACCAATGCCATATGGTATACCCCCTGGCTCTGCTCTTGCGAAAAATGACATGAGGAATCCAACAGTTGATAGAAGGAAGAGAAAGTGA 621 0.4251 MASKTESENSTDTTPSSPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPSNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSATPAPPAPTSTPAQAPVPALPPVPATNVAVTASSTQAPSPMPYGIPPGSALAKNDMRNPTVDRRKRK. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07489 206 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 206 IPR008831 GO:0003712|GO:0006355|GO:0016592
Seca8g07489 206 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g07489 206 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Seca8g07489 206 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Seca8g07489 206 MobiDBLite consensus disorder prediction 133 206 - -
Seca8g07489 206 MobiDBLite consensus disorder prediction 137 162 - -
Seca8g07489 206 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
Seca8g07489 206 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07489 Seca-Chr8 171987916 171991000 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Seca8g07489 Med31 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07489 K15153 - gmx:100527879 343.969