Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07487 ATGGAAGATGATGGGTTGGTGCTATTGTTCTATGCCCCTGGTCAGAAGAAGTTGAGGTTTCTGCTCTCCCCTGTGGCAATGGTGCTGTTCATGCTGTTGCTTCTCTCTCCATTTGCTTCGCCACTCAGTGATGAAGGACAAGCATTAATGGCGATCAAGGCTTCCTTGAGCAATATAGCAGACATACTCCTTGATTGGGATGACGTGCATAATGAAGACTTCTGCTCTTGGCGTGGAGTCTTCTGTGACAATGTCAGCCTTACTGTCATATCTCTGAACCTGTCGAGCTTGAACCTGGGTGGAGAGATATCACCAGCCATTGGTGATTTGGGAAACTTGCAATCCATAGACTTGCAAGGGAATAAACTATCTGGTCAAATTCCAGATGAAATTGGCAACTGTGCTGAGCTTATTCATCTGGATTTGTCTGATAATCAGCTATATGGTGATATACCTTTCTCAATCTCAAAGCTAAAGAAACTAGAGTTCTTGAATTTAAAGAGTAATCAGCTGACTGGTCCTATCCCTTCAACTTTGACCCAAATTCCAAACCTGAAGACTCTTGATCTTGCTCGAAATAGGCTCACTGGAGAGATTCCAAGACTACTATATTGGAATGAAGTATTGCAGTACCTAGGGCTGCGAGGGAACTTGTTGAGTGGAACTTTGTCCCCTGATATCTGTCAGTTAACTGGTTTGTGGTATTTTGATGTGAGAGGCAATAATTTGACTGGCACTATACCTGACAGTATTGGAAACTGTACAAGTTTTGAAATCTTGGACATATCATATAATCAGATTAGTGGGGAGATTCCATATAATATTGGCTTTCTGCAAGTGGCTACCTTGTCACTTCAAGGAAATAGGCTAACTGGGAAGATTCCAGAAGTGATTGGTTTGATGCAAGCCCTTGCCATTTTGGATTTGAGCGAGAATGAGTTAGTGGGACCAATTCCTCCTATTCTTGGAAATCTCTCTTTTACTGGCAAGCTGTACCTTCATGGAAACATGCTTACTGGTCCAATACCCCCTGAACTTGGCAATATGTCTAAATTGAGCTACCTGCAATTGAATGACAATCAACTAGTGGGTAAAATTCCTGATGAAATCGGGAAGCTTGAACATTTGTTTGAATTGAATCTTGCCAATAATCATCTAGATGGAGCTATTCCACATAACATAAGCTCATGCACTGCCTTAAATCAGTTTAATGTGCATGGTAATCAGTTAAGCGGTTCTATACCATTGAGTTTTCGCAGCCTTGAGAGTCTGACCTACTTAAATCTCTCTGCGAATAACTTCAAGGGGAATATACCTGTTGAGTTGGGCCATATCATAAATCTTGATACACTGGATCTATCTAGCAATAATTTTTCTGGGCATGTCCCAGCTTCTGTCGGTTATCTAGAGCATCTTTTGACCCTGAACTTGAGTCATAACCGCCTTGATGGTACCTTTCCTGCTGAATTTGGAAATCTCAGAAGCATACAGATTATTGATATGTCATTCAACAACCTGTCGGGAAGCATTCCTCCGGAAATTGGGCAGCTGCAAAACCTGGCGTCTCTGATTTTGAACAACAATGACTTACGTGGGAAGATTCCTGATCAGCTGACTAATTGTTTCAGTCTTTCCTCTTTGAACTTCTCTTATAATAACTTTTCTGGAATTATTCCATCTATGAAGAATTTCTCACGATTTTCAGCTGACAGCTTCATTGGAAATCCTTTGTTATGTGGGAATTGGGTAGGATCAATCTGTCGTCCTTATGCACCGAAGTCAAGAGAGATTTTTTCGAGAGTTGCAGTTGTATGTCTTACTCTTGGTATCATCATACTATTGGCCATGGTGATTGTTGCTTTCTATAGATCAAGCCAATCAAAGCAAATGATGAAAGGTTCTAGCAGAACTGGGCAAGGCATGTTGAAGTCTAGGACTAGTCATTTTTTGTGCTATCTTCTTTCAGGGCCCCCTAAACTTGTAATTCTTCATATGGATATGGCTATCCACACCTTGGATGATATAATGAGAAGCACTGAGAATCTAAGTGAAAAATATATAATTGGGTATGGTGCCTCTAGTACAGTATACAAGTGTGCTTTGAAAAATTCCCGGCCAATTGCAGTCAAGCGATTGTACAACCAGCATCCTCATGATTTAAGGGAATTTGAAACCGAACTTGAAACAATCGGCAGCATTAGACATAGAAACCTGGTCACCTTGCATGGTTATGCCCTTACTCCCTGTGGGAATCTTCTTTTCTATGATTATATGGCAAATGGATCTCTGTGGGATCTTCTACATGGTCCCCTGAAGGTAAAACTTGATTGGGAAACAAGGTTGAGGATTGCTGTTGGAGCTGCTGAAGGACTTGCTTATCTCCATCATGATTGCAACCCTCGAATTGTTCATAGGGACATTAAGTCTTCAAATATTTTGCTGGATGAGAACTTTGAGGCTCACCTCTCTGATTTTGGGACTGCAAAATGTATCTCAACCACAAGAACTCACGCATCAACTTACGTTCTTGGAACTATAGGCTACATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCAGATGTCTATAGCTTTGGCATTGTTCTTCTAGAACTACTTACTGGGAAAAAGGCAGTGGACAATGAGTCTAATTTGCATCAACTGATATTGTCCAAGGCAGATAATAACACAGTAATGGAGGCTGTGGATCCAGAAGTCTCTATTACCTGTATTGATCTGGTCCATGTTAAGAAAACCTTTCAACTTGCTTTGCTTTGCACAAAAAGAAACCCTTCTGAGAGGCCTACCATGCATGAAGTAGCCAGGGTTCTGGTATCTCTACTTCCTGCACCTCCAAGTAAAGTGCTTGGTGCACCTGCTAAGACTTTTGACTATGCGCATTTTGTGAAGGGACAACACCGGAAAATGGATGGGCTACAACCTCAGCAGGACAACAATTCAACTAATGCTCAATGGTTTGTTCGCTTTGGAGATGTTATTTCAAAGAGCACACTCTGA 3027 0.4136 MEDDGLVLLFYAPGQKKLRFLLSPVAMVLFMLLLLSPFASPLSDEGQALMAIKASLSNIADILLDWDDVHNEDFCSWRGVFCDNVSLTVISLNLSSLNLGGEISPAIGDLGNLQSIDLQGNKLSGQIPDEIGNCAELIHLDLSDNQLYGDIPFSISKLKKLEFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNLLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELVGPIPPILGNLSFTGKLYLHGNMLTGPIPPELGNMSKLSYLQLNDNQLVGKIPDEIGKLEHLFELNLANNHLDGAIPHNISSCTALNQFNVHGNQLSGSIPLSFRSLESLTYLNLSANNFKGNIPVELGHIINLDTLDLSSNNFSGHVPASVGYLEHLLTLNLSHNRLDGTFPAEFGNLRSIQIIDMSFNNLSGSIPPEIGQLQNLASLILNNNDLRGKIPDQLTNCFSLSSLNFSYNNFSGIIPSMKNFSRFSADSFIGNPLLCGNWVGSICRPYAPKSREIFSRVAVVCLTLGIIILLAMVIVAFYRSSQSKQMMKGSSRTGQGMLKSRTSHFLCYLLSGPPKLVILHMDMAIHTLDDIMRSTENLSEKYIIGYGASSTVYKCALKNSRPIAVKRLYNQHPHDLREFETELETIGSIRHRNLVTLHGYALTPCGNLLFYDYMANGSLWDLLHGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCISTTRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKADNNTVMEAVDPEVSITCIDLVHVKKTFQLALLCTKRNPSERPTMHEVARVLVSLLPAPPSKVLGAPAKTFDYAHFVKGQHRKMDGLQPQQDNNSTNAQWFVRFGDVISKSTL. 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07487 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Seca8g07487 1008 Gene3D Ribonuclease Inhibitor 42 204 IPR032675 -
Seca8g07487 1008 Pfam Leucine rich repeat N-terminal domain 43 83 IPR013210 -
Seca8g07487 1008 Gene3D Phosphorylase Kinase; domain 1 658 757 - -
Seca8g07487 1008 SMART serkin_6 682 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07487 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 42 206 - -
Seca8g07487 1008 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Seca8g07487 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 653 757 - -
Seca8g07487 1008 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Seca8g07487 1008 Pfam Leucine rich repeat 447 506 IPR001611 GO:0005515
Seca8g07487 1008 Gene3D Ribonuclease Inhibitor 205 317 IPR032675 -
Seca8g07487 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 207 316 - -
Seca8g07487 1008 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 181 948 - -
Seca8g07487 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 758 957 - -
Seca8g07487 1008 ProSitePatterns Protein kinases ATP-binding region signature. 688 710 IPR017441 GO:0005524
Seca8g07487 1008 SMART LRR_typ_2 373 397 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 182 206 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 158 181 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 110 134 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 230 254 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 517 541 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 469 492 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 421 445 IPR003591 -
Seca8g07487 1008 SMART LRR_typ_2 349 372 IPR003591 -
Seca8g07487 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 317 590 - -
Seca8g07487 1008 Gene3D Ribonuclease Inhibitor 318 590 IPR032675 -
Seca8g07487 1008 SUPERFAMILY L domain-like 42 336 - -
Seca8g07487 1008 Pfam Protein kinase domain 685 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07487 1008 ProSiteProfiles Protein kinase domain profile. 682 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07487 1008 Pfam Leucine Rich repeat 253 270 IPR001611 GO:0005515
Seca8g07487 1008 Pfam Leucine Rich repeat 183 198 IPR001611 GO:0005515
Seca8g07487 1008 SUPERFAMILY Protein kinase-like (PK-like) 662 947 IPR011009 -
Seca8g07487 1008 SUPERFAMILY L domain-like 324 580 - -
Seca8g07487 1008 Gene3D Transferase(Phosphotransferase) domain 1 758 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07487 Seca-Chr8 171972785 171980640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07487 278 560 Receptor kinase-like Gene Family AT5G07180 39.223 2.93e-45 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Seca8g07487 Pkinase 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07487 K20718 - gmx:100811653 1746.1