Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07479 ATGCCTTCTCTCTCTCTGTCTGATGCTGAGGCATCCCCTAAACATAAGAAGGACGATTCCAACAACCAATCCCCAACTGAACCCCAACCTTCCATCGACATCGTTGCTAACACTAAGAAGACTAAGAAAAGCTCCAAAATTGTGAATGCCCCCGATCCCAACGATGATGGGGTTTCGGGGAAGAAGAAGAAGAAGCGCAAGGCTTCGCAGTTAGAGGCTATGACGACCGCCGATGGGGACGACGAGTTTTGTTCCGAGCTGGTCGAGCCCGAAGAGAAGGACAAGAAAGAGAAGAAGAAGAAGAAGAAAAAGGTCAAGTTGGAGGAAGAACCTTTATTAATGGAAGAGCAGATGCAAGAGGTTAAGAAGAAGGAGGATCCCAATGCCATTTCCAAATTCAGGATATCGGAGTCGTTGAGGGCAAAATTGAAGGAGAAGGGAATCGAGTCACTGTTTCCAATTCAGGCCATGACTTTCGATACCATTCTTGATGGCTCTGATTTGGTTGGTAGGGCTCGCACTGGTCAGGGTAAAACACTGGCCTTCGTGTTGCCCATATTAGAGTCTTTAACAAATGGTCCAACAAAAGCATCAAGAAAAACCGGCTATGGGAGGCCTCCCGGTGTTCTTGTGCTTTTACCCACTAGGGAATTGGCCTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCTTGTTGTTTATATGGTGGAGCTCCATATCAAAGTCAAGAAATTAAGCTCAAGAGAGGCGTTGATATTGTTGTTGGAACACCGGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTTCGTGTGCTTGATGAAGCAGATGAGATGCTCAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAGGTAAGGTAGAAAATGTTGGTAAAGTTCAGACACTTCTGTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTGGTTGGAAATACGAAAATGAAGGCTAGCACCAGTGTCAGGCATATTGTTCTTCCGTGTACTAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCCCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGGGCAGGTAATACTGGAGTCGCTGTTATGCTTTATGATCCAAGAAGATCAAGTGTATCTAAAATAGAAAGAGAATCGGGTGTAAAGTTTGAACATGTATCTGCCCCTCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTAACAGTGGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACCGAGATAAAGAAAAGATCACTACTCACTTCCATGGAGAACTATGTTACACTACTACTTGAAATTGGGAAACCTATCTTCACTCCATCTTTTGCGTATGGAATATTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTCTCACTGCAGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAAGACTTAGATACATATCTCACTGGTCAGGAAAATGCCTCTGATGTAAATTTAGAGGTGTTGAAAGCATTGCCACGTTTGCAGCAGAGAGATCAATCAAGAGGGGGCAGATTTGGTGATGGTGGTGGTCGAGGTGGATTCGGTGATAGAAGTGGGGGGAGCAGATTTTCAGGTGGCAGGGGCGGTGGCAGGAATGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGGAGAGGTCGTGGCAACTGGGGTGGAAAGAGGTGGTGA 2157 0.4539 MPSLSLSDAEASPKHKKDDSNNQSPTEPQPSIDIVANTKKTKKSSKIVNAPDPNDDGVSGKKKKKRKASQLEAMTTADGDDEFCSELVEPEEKDKKEKKKKKKKVKLEEEPLLMEEQMQEVKKKEDPNAISKFRISESLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASRKTGYGRPPGVLVLLPTRELACQVHADFEVYGGAMGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVGKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTSVRHIVLPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSSVSKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLTVVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLTLTADGSGVVFDVPAEDLDTYLTGQENASDVNLEVLKALPRLQQRDQSRGGRFGDGGGRGGFGDRSGGSRFSGGRGGGRNGRFSNDRFSNGGGRGRGNWGGKRW. 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07479 718 MobiDBLite consensus disorder prediction 660 718 - -
Seca8g07479 718 Pfam Helicase conserved C-terminal domain 375 473 IPR001650 -
Seca8g07479 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 512 IPR001650 -
Seca8g07479 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 485 IPR027417 -
Seca8g07479 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 341 IPR014001 -
Seca8g07479 718 Pfam GUCT (NUC152) domain 562 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
Seca8g07479 718 MobiDBLite consensus disorder prediction 23 48 - -
Seca8g07479 718 SMART helicmild6 396 473 IPR001650 -
Seca8g07479 718 CDD DEADc 139 336 - -
Seca8g07479 718 Gene3D - 356 579 IPR027417 -
Seca8g07479 718 MobiDBLite consensus disorder prediction 1 83 - -
Seca8g07479 718 Pfam DEAD/DEAH box helicase 152 329 IPR011545 GO:0003676|GO:0005524
Seca8g07479 718 CDD SF2_C_DEAD 356 482 - -
Seca8g07479 718 CDD GUCT_RH7_like 569 654 - -
Seca8g07479 718 Gene3D - 580 651 - -
Seca8g07479 718 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Seca8g07479 718 Gene3D - 76 341 IPR027417 -
Seca8g07479 718 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 83 537 - -
Seca8g07479 718 SMART ultradead3 147 359 IPR014001 -
Seca8g07479 718 FunFam DEAD-box ATP-dependent RNA helicase 7 579 651 - -
Seca8g07479 718 SUPERFAMILY RNA-binding domain, RBD 566 649 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07479 Seca-Chr8 171828791 171833916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07479 165 479 Eukaryotic Initiation Factors Gene Family AT1G72730 31.661 1.10e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07479 K16911 - gmx:100820207 959.133