Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07475 ATGCCATCTCGGCAGTTATCCACGTCAGCATCACCTCCCAACCACAATCATGTTGCATCTGCTCTCAGTTTCACCGCCTCCGCCTGCCCTCTCATCCTTCTGCTCCTTCTCTGCGTTCGGAAGCGGAAACGAACCACCCCTTCCTCTGACTCTGACTCCAACCCTCCTCACCCTTTCTCCTACCCTCTCCTCCGCCGCGCCACCAACTCTTTCTCCACCCTCCTCGGCCATGGCGGCTTCGGCCCCGTCTTCTCCGGCTCCCTCCCACCCGCCGGAAAACCAATCGCCGTCAAGCTAATGGACTACACCTCACTCCAGGGCGACCGCGAGTTCCACAACGAACTCTTCTTCGCCTCCAGGCTCCGCTCCGACCTCCTCGTTCCCCCTATTGGCTTCTCCTCCGAACCCAAACGCCATCGTTTCTTGCTCGTCTACGACCTCATGCATAACGGTAACCTCCACGACGCCCTTCTCCGTCGCAAGTGCCCTGAACTCATGCTCTGGAACAAGCGCTTCAACATCATCGTCGACATTGCAAGAGCCCTTCACTACCTTCACTCCTGCGATCCCCCGGTCATTCACGGTGACATCAAGCCCAGTAATATTCTCCTCGACCATTGCTTTTCCGCCAAAGTCGCCGATTTTGGACTTGCCCGGTTGAAAATCGTATCCCAGCTTGAAGTTAAAGTGGAAAGCGACAGCAAGAGAAAGGAACAAGAGTTGGAGAGTGATGGTGGATCGGTGGTGGAGGAAGCTGAGAGTGTCAATGCTGGATTGGAAGGTGAGATAGAGAATCAAAATGGGAGCGTGAAGGATTATGTGATGGATTGGATTGGAAAGGAGGTGAACGAGGAAAGGCCAAAAGGGGAATGGGTAGGTGCTGGGTCTAGCAGTGGAACGGCACAGAAAAACAAGAGCGGGAAGAAATTGGAGTGGTGGGAATCAATGGATGAGGAAAAGGGTGCTTTTGGCGTTCTGAAGAAGGAGAAGAGAAGACCAGCAAGGGAATGGTGGAAGGACGAGTATTCTGAAGAGCTTGCCAAGAAGCAAAAGAAAAAGAAGAAACAACAGGAAAAAATGAGAAACAGTGATGACAATGGTGACTATTGGTGGGAGAGAGATGATGATTCTTTGTATTCTGATGTAAAAAAGAGTAATAAAAACCGTGGTAGGAATGGTCGTGATAGTGCAGATTCGTGGTTCAGTGGGGAGCTACGGGGAACTCGATGGAATAGCTATGATTCTTGTAGTGGAGAAATACCCAAGAGTGGTGGTATCAGTAGTACTCCAAGTATGAGGGGAACACTTTTCTATGTTGCTCCTGAGTATGGCTATAGTGGTGATGTATCAGAGAAGTGTGATGTGTATAGCTTTGGGGTTCTATTGCTTGTTATCATTTCTGGGAGGCGTCCACTTCAAGTGACTGGTTCACCCTCAGAGTTTCAGCGAGCGAACCTTGTGTCTTGGGCTCGCCATTGTGCACGCAATGGGAAGCTTCTTGAATTGGTTGATCAGTCTATTCAGTCATTGGATGAAGAGCAGGCTCTTCTCTGCATCAAGGTTGCTCTGCTTTGTTTGATTAAATTACCTGATCGTCGTCCTTCAATGAAAGAGGTTGTGGGAATGCTTTGTGGGGAGTTAGAGCCACCCCAATTGCCTGTTGAGTACTCAAAATCTCAATTCTCATTCAAGTCTCGGAAAGAAGCCCGGTGA 1713 0.5003 MPSRQLSTSASPPNHNHVASALSFTASACPLILLLLLCVRKRKRTTPSSDSDSNPPHPFSYPLLRRATNSFSTLLGHGGFGPVFSGSLPPAGKPIAVKLMDYTSLQGDREFHNELFFASRLRSDLLVPPIGFSSEPKRHRFLLVYDLMHNGNLHDALLRRKCPELMLWNKRFNIIVDIARALHYLHSCDPPVIHGDIKPSNILLDHCFSAKVADFGLARLKIVSQLEVKVESDSKRKEQELESDGGSVVEEAESVNAGLEGEIENQNGSVKDYVMDWIGKEVNEERPKGEWVGAGSSSGTAQKNKSGKKLEWWESMDEEKGAFGVLKKEKRRPAREWWKDEYSEELAKKQKKKKKQQEKMRNSDDNGDYWWERDDDSLYSDVKKSNKNRGRNGRDSADSWFSGELRGTRWNSYDSCSGEIPKSGGISSTPSMRGTLFYVAPEYGYSGDVSEKCDVYSFGVLLLVIISGRRPLQVTGSPSEFQRANLVSWARHCARNGKLLELVDQSIQSLDEEQALLCIKVALLCLIKLPDRRPSMKEVVGMLCGELEPPQLPVEYSKSQFSFKSRKEAR. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07475 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Seca8g07475 570 SUPERFAMILY Protein kinase-like (PK-like) 53 556 IPR011009 -
Seca8g07475 570 ProSiteProfiles Protein kinase domain profile. 69 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07475 570 Gene3D Transferase(Phosphotransferase) domain 1 55 242 - -
Seca8g07475 570 Coils Coil 339 366 - -
Seca8g07475 570 Coils Coil 249 269 - -
Seca8g07475 570 PANTHER OS07G0586332 PROTEIN 266 569 IPR044576 -
Seca8g07475 570 Gene3D Transferase(Phosphotransferase) domain 1 414 552 - -
Seca8g07475 570 MobiDBLite consensus disorder prediction 286 309 - -
Seca8g07475 570 MobiDBLite consensus disorder prediction 346 367 - -
Seca8g07475 570 Pfam Protein kinase domain 73 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07475 570 SMART serkin_6 69 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g07475 570 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07475 Seca-Chr8 171770609 171772321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07475 429 560 Receptor kinase-like Gene Family AT2G43700 33.835 8.77e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Seca8g07475 Pkinase 4.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07475 - - aprc:113872924 773.467