Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07474 ATGTTTCCTTTACAACGAGGCAATGAGCTGGCGATCTCGTTTTCTAATAGTGTCCACCACCGGCAGCACAAAATCTCTCAAGATCTGATTCTGGATGATTGTGATTCTCCCCTTCTCCATAAACAATTGGGTATTACTACTAGTAGCCGCCCAAAACAATTATTTTATGATGCTAATTCTTCTAACAACCAAGAATATGAAAAGAAGATGGTTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTTCCCTTCATGCCTCCCTTAGATCCCTTCTCCCTCTTCACTTCATCAAGGGAAAGCGTTCGTTATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTGCACAAGAGTATCAAAGAACTGAGTGACAAGAGGGATGAACTGAAGAAACAACTCTCCAAAAACAAGCAAGCATCATCTTCTTCTTCTTCTTCTACCTGCAGTACTTTCACTTTCCACCACAATAATGGAGCTGTGGGAATTGAAATCAATAGTGGCTTCAGAGAGGAAAGGCTCCCACTTTCAAAATTGCTGGAACTAATTCTGTTAGAAGGACTCGAAGTTGTCACTTGCCTTTCAACTGAAGTCAATGGCAGATTACTCCACACTATCCACTGTGAGTTTATCTCAAGTGATGAAAATATAGAGGTGAAGAATTTTTTTATATTTAAGTCAGAAATCATATCATGCATTATGAAGAAGGAAATACCATGA 729 0.3964 MFPLQRGNELAISFSNSVHHRQHKISQDLILDDCDSPLLHKQLGITTSSRPKQLFYDANSSNNQEYEKKMVHREIERQRRQEMASLHASLRSLLPLHFIKGKRSLSDQMNEAVNYINHLHKSIKELSDKRDELKKQLSKNKQASSSSSSSTCSTFTFHHNNGAVGIEINSGFREERLPLSKLLELILLEGLEVVTCLSTEVNGRLLHTIHCEFISSDENIEVKNFFIFKSEIISCIMKKEIP. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07474 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 119 IPR011598 GO:0046983
Seca8g07474 242 SMART finulus 73 125 IPR011598 GO:0046983
Seca8g07474 242 FunFam Transcription factor bHLH126 59 147 - -
Seca8g07474 242 CDD bHLH_AtORG2_like 68 141 - -
Seca8g07474 242 Pfam Helix-loop-helix DNA-binding domain 68 120 IPR011598 GO:0046983
Seca8g07474 242 Coils Coil 116 143 - -
Seca8g07474 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 60 216 - -
Seca8g07474 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 143 IPR036638 GO:0046983
Seca8g07474 242 Gene3D - 58 148 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07474 Seca-Chr8 171763755 171767573 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07474 58 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.945 1.14e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g07474 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07474 - - gmx:100775836 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07474 8 171763755 171767573 Seca8g07474 8 171763755 171767573 ECH
Seca10g04223 10 95224087 95225592 Seca8g07474 8 171763755 171767573 PCT