Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g07473 | ATGATTCGTAGGGAAGTTGAAAGACAAAGGAGGACTCATATGTCTATCTTATGTGCATCCCTCCGCTCTGCACTCCCTTTTCACCTCATCAAGGGAAAACGTTCGGTATCAGATCACATAGGAGAGGCTGCAAATTATATTCAATTTTTGAAGGAAAAGATTAATGGACTGGAAATGAAGAGAGATAGGCTGAAATTAGAGATGGTTAGTGGAAGTGAATCTGCAGCAGATCATCATGATTTAAGTAGTAGTGTTACTGTACAACAAGCCAACATCAGTCTCATTCCAGACTACGGTGTGGAAATTGCCATATGCAGTAGTACTGGTTTTGATAAGGAGAGAAGCTCACCTCTATCAGATTTGTTGGAAATAGTTTCAAGAAGGATGTGA | 390 | 0.4 | MIRREVERQRRTHMSILCASLRSALPFHLIKGKRSVSDHIGEAANYIQFLKEKINGLEMKRDRLKLEMVSGSESAADHHDLSSSVTVQQANISLIPDYGVEIAICSSTGFDKERSSPLSDLLEIVSRRM. | 130 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g07473 | 129 | Gene3D | - | 2 | 78 | IPR036638 | GO:0046983 | |
Seca8g07473 | 129 | PANTHER | ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED | 3 | 124 | - | - | |
Seca8g07473 | 129 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 3 | 69 | IPR036638 | GO:0046983 | |
Seca8g07473 | 129 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 50 | IPR011598 | GO:0046983 | |
Seca8g07473 | 129 | Coils | Coil | 47 | 67 | - | - | |
Seca8g07473 | 129 | Pfam | Helix-loop-helix DNA-binding domain | 4 | 50 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g07473 | Seca-Chr8 | 171742548 | 171743102 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g07473 | 1 | 64 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G51780 | 59.375 | 4.56e-20 | 79.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Seca8g07473 | HLH | 1.3e-05 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g07473 | - | - | gmx:100776724 | 142.51 |