Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07473 ATGATTCGTAGGGAAGTTGAAAGACAAAGGAGGACTCATATGTCTATCTTATGTGCATCCCTCCGCTCTGCACTCCCTTTTCACCTCATCAAGGGAAAACGTTCGGTATCAGATCACATAGGAGAGGCTGCAAATTATATTCAATTTTTGAAGGAAAAGATTAATGGACTGGAAATGAAGAGAGATAGGCTGAAATTAGAGATGGTTAGTGGAAGTGAATCTGCAGCAGATCATCATGATTTAAGTAGTAGTGTTACTGTACAACAAGCCAACATCAGTCTCATTCCAGACTACGGTGTGGAAATTGCCATATGCAGTAGTACTGGTTTTGATAAGGAGAGAAGCTCACCTCTATCAGATTTGTTGGAAATAGTTTCAAGAAGGATGTGA 390 0.4 MIRREVERQRRTHMSILCASLRSALPFHLIKGKRSVSDHIGEAANYIQFLKEKINGLEMKRDRLKLEMVSGSESAADHHDLSSSVTVQQANISLIPDYGVEIAICSSTGFDKERSSPLSDLLEIVSRRM. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07473 129 Gene3D - 2 78 IPR036638 GO:0046983
Seca8g07473 129 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 3 124 - -
Seca8g07473 129 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 69 IPR036638 GO:0046983
Seca8g07473 129 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 50 IPR011598 GO:0046983
Seca8g07473 129 Coils Coil 47 67 - -
Seca8g07473 129 Pfam Helix-loop-helix DNA-binding domain 4 50 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07473 Seca-Chr8 171742548 171743102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07473 1 64 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 59.375 4.56e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g07473 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07473 - - gmx:100776724 142.51