Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07472 ATGAATCCTTTCCACCCAAATGATGATGAATTGTATTTTCAGATTCCATCTCCTAATTATTATTCCCTACCAATCCAAACAACCACTCGTGATTATGAAGATCAGATCTTGCATGATCCTTTGATTGATGCCACTGCCACTGGTCTTCTTCCTTGTACAAATAGTCAAACGGTAAAGGGCAAGAAGCAAAAACAGTTACCAGCTGCTGCTACAAAAACAAAAGATCATGAAAACAAGAAGTGGATGCATAGGGAGACTGAAAAACAAAGAAGGCAAGAAATGTCCAGGCTTTGCTCCTCCTTTAGATCCCTTCTTCCTTTTGAATATATTAAGGGAAAGCGTTCAACTTCTGATCACATGCATGAGGGTACAAAGTATATCAAACACCTTGAGAATAAGGTGAAGCAGTTGCAAGCAAAGAAGGATGAGCTGATGAAGTTATCTAATTTGAGTATCCATCCTGAAACCTATGTCATTGTTCATCCTTGTTCGGGAGGAGGTGTTCAGATTAAGTGTAGTTATAGCTTCAGGAAACATGACTTTCCTTTGTCAAGAATGTTACATATAGTGCTTAAACAAGGGCTTAATGTCGTCAACTGTGTTTCCATCAAAACAGATGATCACAGATTCATACACGCTATCCGATCAGAGGATCCACATTCAATGACCGAGATTAATTACAGTGAACTGCAAAGAAAGCTTATAGCAGCAATATCATCATCAAGTTTGGAGGAGACTGTGTGA 744 0.3884 MNPFHPNDDELYFQIPSPNYYSLPIQTTTRDYEDQILHDPLIDATATGLLPCTNSQTVKGKKQKQLPAAATKTKDHENKKWMHRETEKQRRQEMSRLCSSFRSLLPFEYIKGKRSTSDHMHEGTKYIKHLENKVKQLQAKKDELMKLSNLSIHPETYVIVHPCSGGGVQIKCSYSFRKHDFPLSRMLHIVLKQGLNVVNCVSIKTDDHRFIHAIRSEDPHSMTEINYSELQRKLIAAISSSSLEETV. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07472 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Seca8g07472 247 CDD bHLH_AtORG2_like 79 155 - -
Seca8g07472 247 MobiDBLite consensus disorder prediction 60 89 - -
Seca8g07472 247 Pfam Helix-loop-helix DNA-binding domain 80 131 IPR011598 GO:0046983
Seca8g07472 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 146 IPR036638 GO:0046983
Seca8g07472 247 MobiDBLite consensus disorder prediction 68 89 - -
Seca8g07472 247 Gene3D - 69 153 IPR036638 GO:0046983
Seca8g07472 247 FunFam Transcription factor bHLH126 70 156 - -
Seca8g07472 247 Coils Coil 120 150 - -
Seca8g07472 247 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 70 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07472 Seca-Chr8 171732306 171733742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07472 73 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.202 7.06e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g07472 HLH 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07472 - - gmx:100803786 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07472 8 171732306 171733742 Seca8g07472 8 171732306 171733742 ECH
Seca10g04216 10 95062672 95064181 Seca8g07472 8 171732306 171733742 PCT